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The map label for this gene is ysmB

Identifier: 16079892

GI number: 16079892

Start: 2904043

End: 2904483

Strand: Reverse

Name: ysmB

Synonym: BSU28400

Alternate gene names: 16079892

Gene position: 2904483-2904043 (Counterclockwise)

Preceding gene: 255767655

Following gene: 255767654

Centisome position: 68.9

GC content: 43.31

Gene sequence:

>441_bases
ATGACATCAAAACCTTTGGAGCATGTTGCGGATATTGAAAAGTCACTCCGCCACATTGCCGCGATCATTAAGCAAAAAGG
ACGAGAAATCCTTAACCAATATGCGATTACGCCGCCGCAATTTGTCGGCTTGCAATGGCTTTATGAATTAGGAGATATGA
CAATCGGTGAATTATCGGGCAAAATGTATCTGGCATGCAGCACGACAACGGACTTAATCGACCGCATGCAAAAAAATGAG
CTTGTTGAGCGGGTCAAGGACCCGGCGGACAGACGTGTTGTCAGGATACATCTGCTGCCTGAAGGAGAACGGATTATCCA
AGAGGTCATTACAAAAAGACAGGAATATCTGCGTGATATGTTCGAATCGTTTACAGATGAAGAAATAGCCATCTTCGAAA
AATCTTTGATGAAACTGCAGCATGAAATGAAGAGAAAATGA

Upstream 100 bases:

>100_bases
CTATTTCTCTCCTGCGAGTCTTGCATTTTCTTCAAAAAAGAAGGAAAATAGACACGGAACGCTTTTGTGCGTAAGAGATC
CTTGAGTGAGGGATGGACAA

Downstream 100 bases:

>100_bases
GGCGATTTTGTTGGAACAACCAATAGGAGTCATTGATTCCGGGGTTGGCGGTTTAACCGTTGCGAAGGAAATCATGAGAC
AGCTACCTAAAGAAAATATT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MTSKPLEHVADIEKSLRHIAAIIKQKGREILNQYAITPPQFVGLQWLYELGDMTIGELSGKMYLACSTTTDLIDRMQKNE
LVERVKDPADRRVVRIHLLPEGERIIQEVITKRQEYLRDMFESFTDEEIAIFEKSLMKLQHEMKRK

Sequences:

>Translated_146_residues
MTSKPLEHVADIEKSLRHIAAIIKQKGREILNQYAITPPQFVGLQWLYELGDMTIGELSGKMYLACSTTTDLIDRMQKNE
LVERVKDPADRRVVRIHLLPEGERIIQEVITKRQEYLRDMFESFTDEEIAIFEKSLMKLQHEMKRK
>Mature_145_residues
TSKPLEHVADIEKSLRHIAAIIKQKGREILNQYAITPPQFVGLQWLYELGDMTIGELSGKMYLACSTTTDLIDRMQKNEL
VERVKDPADRRVVRIHLLPEGERIIQEVITKRQEYLRDMFESFTDEEIAIFEKSLMKLQHEMKRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YSMB_BACSU (P97247)

Other databases:

- EMBL:   Z75208
- EMBL:   AL009126
- PIR:   B69986
- RefSeq:   NP_390718.1
- ProteinModelPortal:   P97247
- SMR:   P97247
- EnsemblBacteria:   EBBACT00000003898
- GeneID:   937461
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28400
- NMPDR:   fig|224308.1.peg.2843
- GenoList:   BSU28400
- GeneTree:   EBGT00070000032282
- HOGENOM:   HBG476828
- OMA:   QFVALQW
- ProtClustDB:   CLSK873495
- BioCyc:   BSUB:BSU28400-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000835
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00598
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 17144; Mature: 17013

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKPLEHVADIEKSLRHIAAIIKQKGREILNQYAITPPQFVGLQWLYELGDMTIGELSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCC
KMYLACSTTTDLIDRMQKNELVERVKDPADRRVVRIHLLPEGERIIQEVITKRQEYLRDM
CEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
FESFTDEEIAIFEKSLMKLQHEMKRK
HHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSKPLEHVADIEKSLRHIAAIIKQKGREILNQYAITPPQFVGLQWLYELGDMTIGELSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCC
KMYLACSTTTDLIDRMQKNELVERVKDPADRRVVRIHLLPEGERIIQEVITKRQEYLRDM
CEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
FESFTDEEIAIFEKSLMKLQHEMKRK
HHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377