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The map label for this gene is yraN

Identifier: 16079740

GI number: 16079740

Start: 2745594

End: 2746463

Strand: Reverse

Name: yraN

Synonym: BSU26870

Alternate gene names: 16079740

Gene position: 2746463-2745594 (Counterclockwise)

Preceding gene: 16079742

Following gene: 16079739

Centisome position: 65.15

GC content: 37.13

Gene sequence:

>870_bases
ATGGATGAGAAAGATTGGATTTTATTGAAAATTCTTCACGAAGAACAAAGTGTAACAAAAACAGCAGAACGATTATTTAC
ATCACAGCCTTCCATCACTTATCGGTTGAAAAAGATTGAGGAGATTTTCGGAATTGAATTATTCACCAAAAGGCATAAAG
GAATTACCTTTACTGCGGAAGGAGAACACTTGGTTGCTTATGCAAGAAGAATGCTACAGGAACTTCAAGATACCAAAGAT
CATATCTCTAATCTAAGCAAAGAGGTGCAAGGACATCTAAGGCTGGGGGTATCAAGCAATTTCGCTCAATATAAGCTCCC
TAAGTTATTAAGGGAATTTTCCACTATGTATCCTAATGTCCAATATAGTGTACAAACAGGCTGGAGCACAGATGTCATGA
AATTATTAGATGCTGGTATTGTACAAGTCGGTATACTGAGAGGAAGCCATCGCTGGAAAGGGGTGGAGGAACGGCTGACA
CGGGAAAAATTACATATCATCTCAAAAAAACCAATAACGATAGAGCAACTTCCTTTTTTACCTTTTATCAAATATAAAAC
GGATGCTTCTTTAAAAACGATTATAGAAGATTGGATGCATACGAATCTAAAACAAGCCCCCATTATTGCAATGGAAGTGG
ATCGACAAGAGACTTGCAAAGAGATGGTAAAGCATGGTCTTGGTTACTCCATAGCACCAGAAATTTGCCTGCAGGAATCT
GATCATTTGTACACAATGGAACTGTATAATGCTAAGGGTAAGCCTCTAATGAGAGATACTTGGCTAATGTACGATCAAAA
ATCATTAGGAATCAAACTCGTTAAAGCATTCATTGATTTTTTAAAGGGTGAACAAATGGTAACCATTTAA

Upstream 100 bases:

>100_bases
GTGTAGAAGGTAAAAAAATAAAAATAAAATATAAGTTTTCTTAATATTCGATAAAAAAACTTTTATAATTGTGAAAGAAG
GACTAGAAAGGAAGATGAAA

Downstream 100 bases:

>100_bases
AGTTATGATAGAATTTTTTTTGAAACACAGTAAAAAAATATTTATTTAACTTATTACACCGTATAAGATATGTTAATCAA
AAGTCATTTGAAAGCGCATT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MDEKDWILLKILHEEQSVTKTAERLFTSQPSITYRLKKIEEIFGIELFTKRHKGITFTAEGEHLVAYARRMLQELQDTKD
HISNLSKEVQGHLRLGVSSNFAQYKLPKLLREFSTMYPNVQYSVQTGWSTDVMKLLDAGIVQVGILRGSHRWKGVEERLT
REKLHIISKKPITIEQLPFLPFIKYKTDASLKTIIEDWMHTNLKQAPIIAMEVDRQETCKEMVKHGLGYSIAPEICLQES
DHLYTMELYNAKGKPLMRDTWLMYDQKSLGIKLVKAFIDFLKGEQMVTI

Sequences:

>Translated_289_residues
MDEKDWILLKILHEEQSVTKTAERLFTSQPSITYRLKKIEEIFGIELFTKRHKGITFTAEGEHLVAYARRMLQELQDTKD
HISNLSKEVQGHLRLGVSSNFAQYKLPKLLREFSTMYPNVQYSVQTGWSTDVMKLLDAGIVQVGILRGSHRWKGVEERLT
REKLHIISKKPITIEQLPFLPFIKYKTDASLKTIIEDWMHTNLKQAPIIAMEVDRQETCKEMVKHGLGYSIAPEICLQES
DHLYTMELYNAKGKPLMRDTWLMYDQKSLGIKLVKAFIDFLKGEQMVTI
>Mature_289_residues
MDEKDWILLKILHEEQSVTKTAERLFTSQPSITYRLKKIEEIFGIELFTKRHKGITFTAEGEHLVAYARRMLQELQDTKD
HISNLSKEVQGHLRLGVSSNFAQYKLPKLLREFSTMYPNVQYSVQTGWSTDVMKLLDAGIVQVGILRGSHRWKGVEERLT
REKLHIISKKPITIEQLPFLPFIKYKTDASLKTIIEDWMHTNLKQAPIIAMEVDRQETCKEMVKHGLGYSIAPEICLQES
DHLYTMELYNAKGKPLMRDTWLMYDQKSLGIKLVKAFIDFLKGEQMVTI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1788481, Length=272, Percent_Identity=23.8970588235294, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787806, Length=286, Percent_Identity=21.6783216783217, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788296, Length=240, Percent_Identity=25.4166666666667, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=24.3027888446215, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI157672245, Length=132, Percent_Identity=31.0606060606061, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=22.2222222222222, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789173, Length=237, Percent_Identity=23.2067510548523, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787879, Length=233, Percent_Identity=24.8927038626609, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693105, Length=251, Percent_Identity=22.7091633466135, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787589, Length=138, Percent_Identity=26.8115942028986, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=126, Percent_Identity=26.984126984127, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=125, Percent_Identity=24.8, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790399, Length=146, Percent_Identity=24.6575342465753, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YRAN_BACSU (O07906)

Other databases:

- EMBL:   X92868
- EMBL:   U93875
- EMBL:   AL009126
- PIR:   F69971
- RefSeq:   NP_390564.1
- ProteinModelPortal:   O07906
- EnsemblBacteria:   EBBACT00000001016
- GeneID:   937614
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26870
- NMPDR:   fig|224308.1.peg.2689
- GenoList:   BSU26870
- GeneTree:   EBGT00050000000807
- HOGENOM:   HBG338345
- OMA:   KEMVKHG
- BioCyc:   BSUB:BSU26870-MONOMER
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 33617; Mature: 33617

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEKDWILLKILHEEQSVTKTAERLFTSQPSITYRLKKIEEIFGIELFTKRHKGITFTAE
CCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
GEHLVAYARRMLQELQDTKDHISNLSKEVQGHLRLGVSSNFAQYKLPKLLREFSTMYPNV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCE
QYSVQTGWSTDVMKLLDAGIVQVGILRGSHRWKGVEERLTREKLHIISKKPITIEQLPFL
EEEEECCCCHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCC
PFIKYKTDASLKTIIEDWMHTNLKQAPIIAMEVDRQETCKEMVKHGLGYSIAPEICLQES
CEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHCCC
DHLYTMELYNAKGKPLMRDTWLMYDQKSLGIKLVKAFIDFLKGEQMVTI
CCEEEEEEECCCCCCCHHHHHHEECCHHHHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure
MDEKDWILLKILHEEQSVTKTAERLFTSQPSITYRLKKIEEIFGIELFTKRHKGITFTAE
CCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
GEHLVAYARRMLQELQDTKDHISNLSKEVQGHLRLGVSSNFAQYKLPKLLREFSTMYPNV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCE
QYSVQTGWSTDVMKLLDAGIVQVGILRGSHRWKGVEERLTREKLHIISKKPITIEQLPFL
EEEEECCCCHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCC
PFIKYKTDASLKTIIEDWMHTNLKQAPIIAMEVDRQETCKEMVKHGLGYSIAPEICLQES
CEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHCCC
DHLYTMELYNAKGKPLMRDTWLMYDQKSLGIKLVKAFIDFLKGEQMVTI
CCEEEEEEECCCCCCCHHHHHHEECCHHHHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141695; 9308178; 9384377