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The map label for this gene is yrkF

Identifier: 16079706

GI number: 16079706

Start: 2712577

End: 2713134

Strand: Reverse

Name: yrkF

Synonym: BSU26530

Alternate gene names: 16079706

Gene position: 2713134-2712577 (Counterclockwise)

Preceding gene: 16079707

Following gene: 255767613

Centisome position: 64.36

GC content: 39.61

Gene sequence:

>558_bases
ATGATGAAAGCAACTATTGTACTAGACGCTAAAGGTTTGGCGTGTCCAATGCCTATCGTAAAAACGAAGAAGAGAATGAA
GGATTTAAAAGCTGGTGAAGTATTGGAAATTCATGCGACAGATAAAGGTTCTACAGCAGATCTGGAAGCATGGGCAAAAA
GTACAGGCCATGAATATCTGGGTACTGAAGCAGAGGGAGAAATACTTCGTCATTTTCTTCGAAAAGGAGGAGAGCATTCA
TCAGAAAATGCATCTTCAATTCCTGAGATTTCATTAGAAGCTTTCAAACAGAAAGTAGATAGTGACGAGTCTCTTAACAT
TTTAGATGTTCGAGAGATAGAGGAATATGAAAAAGCTCATATCCCAGGAGTTGTGCATATCCCTCTTGGTGAAGTGGAAA
AGCGCGCTAACGAATTAAACGAAAATGATGAAATTTATATTATCTGCCATTCGGGAAGAAGGAGTGAAATGGCGGCCCGC
ACCATGAAAAAACAAGGTTTTAAAAAGGTTATTAATGTTGTCCCGGGTATGCGGGATTGGACAGGTAAAACCGAATAA

Upstream 100 bases:

>100_bases
CAAATATAAAAGGGGGTATGAATACATGGTGTTAACTTACAGTGAGAAACTTTTTGTATATTTGTATACCCCCACCCCTA
TATAAGAAAAGGAGGAAAAA

Downstream 100 bases:

>100_bases
ATAAAAAGCATGATGAACAGATGAGTACAAGAGTAGCGATTATTGCGGCAAATAGCGGTCTGTTTGATGCTTATAAAGTC
TGTAATATTGCGACAAGGAA

Product: rhodanese-related sulfur transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MMKATIVLDAKGLACPMPIVKTKKRMKDLKAGEVLEIHATDKGSTADLEAWAKSTGHEYLGTEAEGEILRHFLRKGGEHS
SENASSIPEISLEAFKQKVDSDESLNILDVREIEEYEKAHIPGVVHIPLGEVEKRANELNENDEIYIICHSGRRSEMAAR
TMKKQGFKKVINVVPGMRDWTGKTE

Sequences:

>Translated_185_residues
MMKATIVLDAKGLACPMPIVKTKKRMKDLKAGEVLEIHATDKGSTADLEAWAKSTGHEYLGTEAEGEILRHFLRKGGEHS
SENASSIPEISLEAFKQKVDSDESLNILDVREIEEYEKAHIPGVVHIPLGEVEKRANELNENDEIYIICHSGRRSEMAAR
TMKKQGFKKVINVVPGMRDWTGKTE
>Mature_185_residues
MMKATIVLDAKGLACPMPIVKTKKRMKDLKAGEVLEIHATDKGSTADLEAWAKSTGHEYLGTEAEGEILRHFLRKGGEHS
SENASSIPEISLEAFKQKVDSDESLNILDVREIEEYEKAHIPGVVHIPLGEVEKRANELNENDEIYIICHSGRRSEMAAR
TMKKQGFKKVINVVPGMRDWTGKTE

Specific function: Unknown

COG id: COG0425

COG function: function code O; Predicted redox protein, regulator of disulfide bond formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRKF_BACSU (P54433)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   D69976
- RefSeq:   NP_390530.1
- ProteinModelPortal:   P54433
- SMR:   P54433
- EnsemblBacteria:   EBBACT00000001510
- GeneID:   937647
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26530
- NMPDR:   fig|224308.1.peg.2655
- GenoList:   BSU26530
- GeneTree:   EBGT00050000000398
- HOGENOM:   HBG313797
- OMA:   NVIPGML
- PhylomeDB:   P54433
- ProtClustDB:   CLSK887628
- BioCyc:   BSUB:BSU26530-MONOMER
- GO:   GO:0005737
- InterPro:   IPR001763
- InterPro:   IPR001455
- Gene3D:   G3DSA:3.40.250.10
- Gene3D:   G3DSA:3.30.110.40
- SMART:   SM00450

Pfam domain/function: PF00581 Rhodanese; PF01206 SirA; SSF52821 Rhodanese-like; SSF64307 SirA_like

EC number: NA

Molecular weight: Translated: 20655; Mature: 20655

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50206 RHODANESE_3; PS01148 UPF0033

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKATIVLDAKGLACPMPIVKTKKRMKDLKAGEVLEIHATDKGSTADLEAWAKSTGHEYL
CCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCHHC
GTEAEGEILRHFLRKGGEHSSENASSIPEISLEAFKQKVDSDESLNILDVREIEEYEKAH
CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHC
IPGVVHIPLGEVEKRANELNENDEIYIICHSGRRSEMAARTMKKQGFKKVINVVPGMRDW
CCEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
TGKTE
CCCCC
>Mature Secondary Structure
MMKATIVLDAKGLACPMPIVKTKKRMKDLKAGEVLEIHATDKGSTADLEAWAKSTGHEYL
CCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCHHC
GTEAEGEILRHFLRKGGEHSSENASSIPEISLEAFKQKVDSDESLNILDVREIEEYEKAH
CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHC
IPGVVHIPLGEVEKRANELNENDEIYIICHSGRRSEMAARTMKKQGFKKVINVVPGMRDW
CCEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
TGKTE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377