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The map label for this gene is yqaF

Identifier: 16079687

GI number: 16079687

Start: 2698486

End: 2698716

Strand: Reverse

Name: yqaF

Synonym: BSU26340

Alternate gene names: 16079687

Gene position: 2698716-2698486 (Counterclockwise)

Preceding gene: 16079689

Following gene: 16079686

Centisome position: 64.02

GC content: 35.5

Gene sequence:

>231_bases
ATGATGAGAAAATGGCTTAAGAAAAACCGCTTAGAAAAAGGGTTTACTCAAGAAGAAGTTGCCAAAGCTGCACAGATTGG
TAGAGCATACTACACCATGATAGAAAATGGTACTAGGAAGCCTAGTGTTATTGTCTCAAAAAAAATAGGAGAGAAATTAG
GCTTTGACTGGACTATTTTTTTTGAGGATGTATGTAACGAAACGAAACATAATTCTAAGGATTCAGCATGA

Upstream 100 bases:

>100_bases
AAAACGATACTTTTTTTATGAAAATGTGTTGACAATGTAACGAATCGATACTATTATCTAAGTAACGAAACGTTACATTT
TCTGATTAAGGGGGTGAAAA

Downstream 100 bases:

>100_bases
TTAGAATTCACAAAGGAGGCCTTTTAATTATGAAAGTCATCTTGAAAAAAGGACCACTGTTTGAACAGGCAGAGGCCAAA
GCCTACAAATACCTCAGTGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MMRKWLKKNRLEKGFTQEEVAKAAQIGRAYYTMIENGTRKPSVIVSKKIGEKLGFDWTIFFEDVCNETKHNSKDSA

Sequences:

>Translated_76_residues
MMRKWLKKNRLEKGFTQEEVAKAAQIGRAYYTMIENGTRKPSVIVSKKIGEKLGFDWTIFFEDVCNETKHNSKDSA
>Mature_76_residues
MMRKWLKKNRLEKGFTQEEVAKAAQIGRAYYTMIENGTRKPSVIVSKKIGEKLGFDWTIFFEDVCNETKHNSKDSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQAF_BACSU (P45903)

Other databases:

- EMBL:   D32216
- EMBL:   D84432
- EMBL:   AL009126
- PIR:   E69944
- RefSeq:   NP_390511.1
- ProteinModelPortal:   P45903
- SMR:   P45903
- EnsemblBacteria:   EBBACT00000002290
- GeneID:   937684
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26340
- NMPDR:   fig|224308.1.peg.2636
- GenoList:   BSU26340
- GeneTree:   EBGT00070000036405
- HOGENOM:   HBG727458
- OMA:   TTYASIE
- ProtClustDB:   CLSK2393391
- BioCyc:   BSUB:BSU26340-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 8829; Mature: 8829

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRKWLKKNRLEKGFTQEEVAKAAQIGRAYYTMIENGTRKPSVIVSKKIGEKLGFDWTIF
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEH
FEDVCNETKHNSKDSA
HHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMRKWLKKNRLEKGFTQEEVAKAAQIGRAYYTMIENGTRKPSVIVSKKIGEKLGFDWTIF
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEH
FEDVCNETKHNSKDSA
HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895