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The map label for this gene is yqxH

Identifier: 16079644

GI number: 16079644

Start: 2665436

End: 2665858

Strand: Reverse

Name: yqxH

Synonym: BSU25910

Alternate gene names: 16079644

Gene position: 2665858-2665436 (Counterclockwise)

Preceding gene: 16079645

Following gene: 16079643

Centisome position: 63.24

GC content: 35.7

Gene sequence:

>423_bases
ATGGAGGAGACAAGTTTGTTTATCAATTTTGAAACATTAGATTTAGCAAGAGTATATTTATTTGGAGGGGTGAAGTACCT
TGATTTACTTCTAGTACTTAGCATAATTGACGTTTTAACAGGAGTAATCAAGGCATGGAAATTCAAAAAACTGCGAAGTC
GAAGCGCATGGTTTGGCTATGTCCGCAAGCTACTCAATTTCTTTGCGGTCATTTTAGCAAACGTGATTGATACAGTACTC
AATTTGAACGGTGTCTTAACCTTTGGTACCGTTCTTTTTTATATCGCTAATGAAGGTTTGTCAATAACTGAAAACTTAGC
ACAGATTGGTGTTAAAATACCATCATCAATAACAGATCGATTACAAACAATTGAGAACGAAAAAGAACAGAGTAAGAATA
ACGCAGACAAAGCTGCTGGCTAA

Upstream 100 bases:

>100_bases
AGCTTACAGCTTTAACAAATGGAAACTTTTCAGTTAGAGGGACGGCCGTCTCATAAGATCCGGCTGTCCTTTTTTATTTG
CCTCGGAGGAGGTGATTAGA

Downstream 100 bases:

>100_bases
GCCAGTGGCTTTTTTTATCTTACTGACAGAAGGAGAGAGGGTATATGGCCATTAAAGTTGTAAAGAATCTAGTCTCTAAA
TCAAAGTATGGATTGAAATG

Product: holin; skin element

Products: NA

Alternate protein names: ORF2

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MEETSLFINFETLDLARVYLFGGVKYLDLLLVLSIIDVLTGVIKAWKFKKLRSRSAWFGYVRKLLNFFAVILANVIDTVL
NLNGVLTFGTVLFYIANEGLSITENLAQIGVKIPSSITDRLQTIENEKEQSKNNADKAAG

Sequences:

>Translated_140_residues
MEETSLFINFETLDLARVYLFGGVKYLDLLLVLSIIDVLTGVIKAWKFKKLRSRSAWFGYVRKLLNFFAVILANVIDTVL
NLNGVLTFGTVLFYIANEGLSITENLAQIGVKIPSSITDRLQTIENEKEQSKNNADKAAG
>Mature_140_residues
MEETSLFINFETLDLARVYLFGGVKYLDLLLVLSIIDVLTGVIKAWKFKKLRSRSAWFGYVRKLLNFFAVILANVIDTVL
NLNGVLTFGTVLFYIANEGLSITENLAQIGVKIPSSITDRLQTIENEKEQSKNNADKAAG

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQXH_BACSU (P24811)

Other databases:

- EMBL:   M59232
- EMBL:   D32216
- EMBL:   D84432
- EMBL:   AL009126
- PIR:   B44816
- RefSeq:   NP_390468.1
- EnsemblBacteria:   EBBACT00000002378
- GeneID:   937782
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU25910
- NMPDR:   fig|224308.1.peg.2593
- GenoList:   BSU25910
- GeneTree:   EBGT00050000001834
- HOGENOM:   HBG428180
- OMA:   SIVENCA
- ProtClustDB:   CLSK247918
- BioCyc:   BSUB:BSU25910-MONOMER
- InterPro:   IPR006480
- TIGRFAMs:   TIGR01593

Pfam domain/function: PF05105 Phage_holin_4

EC number: NA

Molecular weight: Translated: 15662; Mature: 15662

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11110e78)-; HASH(0x111e5c80)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEETSLFINFETLDLARVYLFGGVKYLDLLLVLSIIDVLTGVIKAWKFKKLRSRSAWFGY
CCCCEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VRKLLNFFAVILANVIDTVLNLNGVLTFGTVLFYIANEGLSITENLAQIGVKIPSSITDR
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHH
LQTIENEKEQSKNNADKAAG
HHHHHHHHHHHHCCCCCCCH
>Mature Secondary Structure
MEETSLFINFETLDLARVYLFGGVKYLDLLLVLSIIDVLTGVIKAWKFKKLRSRSAWFGY
CCCCEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VRKLLNFFAVILANVIDTVLNLNGVLTFGTVLFYIANEGLSITENLAQIGVKIPSSITDR
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHH
LQTIENEKEQSKNNADKAAG
HHHHHHHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1683402; 7704261; 8969508; 9384377