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The map label for this gene is yqeD

Identifier: 16079625

GI number: 16079625

Start: 2649842

End: 2650468

Strand: Direct

Name: yqeD

Synonym: BSU25720

Alternate gene names: 16079625

Gene position: 2649842-2650468 (Clockwise)

Preceding gene: 50812270

Following gene: 255767591

Centisome position: 62.86

GC content: 39.55

Gene sequence:

>627_bases
ATGTTAAAAAAAGTAATAGGTATACTTGTGATTATCGCTATCATTTCAGTTGGTTTTTTTCAGAAAGAAGCTTGGCTTGA
TGCAATCAAAGCAGGAGGGATGTTTTCCGTTTTATTTAGTATGCTGCTGATTGCTGCCGATGTTTTTTTCCCAATAGTGC
CGTTTGCTTTGATTGCTGCTTTAAATGGCGCAGTGTTCGGGACTGCAAATGGAATTTGGATTACACTGACCGGCTCAATG
CTTGGTACAATATTGCTGTTTTTTCTCGCCAGGTACAGTTTTAGAGATTGGGCCAGAAAAAAAGTTCAGGCCTATCCTGC
CATACAAAGCTACGAGGCTTCCTTCAACAAAAACGCTTTTACCGCTGTTTTATTAGGAAGGCTGATACCTGTCATACCTT
CACTTGTAATGAACGTGATCTGCGGGCTGAGCCAGGTTCGCTGGCATGTTTTTTTCTTTGCGTCTTTAATAGGGAAAATC
CCCAATATTGTTGTTGTCACTATTGCAGGTGCCAATTTCACCAGCAATAAATTATTGTCTATCAGCATTTACGGTACATA
TATTCTGATCATCATGCTGGTCATTTATAAAAAGTTCCCTCATCTTCTGAAGGTGCCAAAAAAATAA

Upstream 100 bases:

>100_bases
CTGGTTTTCAGTTGAACAGCTGAAATGGCACCAGTTATACTAATTTAGATGACGGAGGTTTTGACTCCTGACATCACCTA
AGTTGGGAGTGACCATAGAC

Downstream 100 bases:

>100_bases
GGAGGCTTGTTGGCCCCCTTACTTTTTTTCTGTCGCATGGCCTCCAAATTCATTTCGAAGCGCAGCAACCACCTTTCCTG
TAAACGTATCGTCTGTTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MLKKVIGILVIIAIISVGFFQKEAWLDAIKAGGMFSVLFSMLLIAADVFFPIVPFALIAALNGAVFGTANGIWITLTGSM
LGTILLFFLARYSFRDWARKKVQAYPAIQSYEASFNKNAFTAVLLGRLIPVIPSLVMNVICGLSQVRWHVFFFASLIGKI
PNIVVVTIAGANFTSNKLLSISIYGTYILIIMLVIYKKFPHLLKVPKK

Sequences:

>Translated_208_residues
MLKKVIGILVIIAIISVGFFQKEAWLDAIKAGGMFSVLFSMLLIAADVFFPIVPFALIAALNGAVFGTANGIWITLTGSM
LGTILLFFLARYSFRDWARKKVQAYPAIQSYEASFNKNAFTAVLLGRLIPVIPSLVMNVICGLSQVRWHVFFFASLIGKI
PNIVVVTIAGANFTSNKLLSISIYGTYILIIMLVIYKKFPHLLKVPKK
>Mature_208_residues
MLKKVIGILVIIAIISVGFFQKEAWLDAIKAGGMFSVLFSMLLIAADVFFPIVPFALIAALNGAVFGTANGIWITLTGSM
LGTILLFFLARYSFRDWARKKVQAYPAIQSYEASFNKNAFTAVLLGRLIPVIPSLVMNVICGLSQVRWHVFFFASLIGKI
PNIVVVTIAGANFTSNKLLSISIYGTYILIIMLVIYKKFPHLLKVPKK

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788049, Length=167, Percent_Identity=27.5449101796407, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQED_BACSU (P54449)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   H69950
- RefSeq:   NP_390449.1
- ProteinModelPortal:   P54449
- EnsemblBacteria:   EBBACT00000000720
- GeneID:   937812
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU25720
- NMPDR:   fig|224308.1.peg.2574
- GenoList:   BSU25720
- GeneTree:   EBGT00050000001741
- HOGENOM:   HBG338189
- OMA:   QKFTHDK
- PhylomeDB:   P54449
- ProtClustDB:   CLSK873278
- BioCyc:   BSUB:BSU25720-MONOMER
- InterPro:   IPR015414

Pfam domain/function: PF09335 SNARE_assoc

EC number: NA

Molecular weight: Translated: 22937; Mature: 22937

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1110198c)-; HASH(0x101345dc)-; HASH(0x104dcbcc)-; HASH(0x102d0d24)-; HASH(0xd4fa978)-; HASH(0x112933f0)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKVIGILVIIAIISVGFFQKEAWLDAIKAGGMFSVLFSMLLIAADVFFPIVPFALIAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNGAVFGTANGIWITLTGSMLGTILLFFLARYSFRDWARKKVQAYPAIQSYEASFNKNAF
HCCCEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHH
TAVLLGRLIPVIPSLVMNVICGLSQVRWHVFFFASLIGKIPNIVVVTIAGANFTSNKLLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEE
ISIYGTYILIIMLVIYKKFPHLLKVPKK
EEHHHHHHHHHHHHHHHHCHHHHCCCCH
>Mature Secondary Structure
MLKKVIGILVIIAIISVGFFQKEAWLDAIKAGGMFSVLFSMLLIAADVFFPIVPFALIAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNGAVFGTANGIWITLTGSMLGTILLFFLARYSFRDWARKKVQAYPAIQSYEASFNKNAF
HCCCEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHH
TAVLLGRLIPVIPSLVMNVICGLSQVRWHVFFFASLIGKIPNIVVVTIAGANFTSNKLLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEE
ISIYGTYILIIMLVIYKKFPHLLKVPKK
EEHHHHHHHHHHHHHHHHCHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377