Click here to switch to the map view.

The map label for this gene is yqkB

Identifier: 16079423

GI number: 16079423

Start: 2461873

End: 2462196

Strand: Reverse

Name: yqkB

Synonym: BSU23660

Alternate gene names: 16079423

Gene position: 2462196-2461873 (Counterclockwise)

Preceding gene: 16079424

Following gene: 16079422

Centisome position: 58.41

GC content: 49.07

Gene sequence:

>324_bases
ATGAACATACATGTGACAGATGCAGCAAAACAGGCACTGCAGCAGGCGTTTGACGCCAACCCGGGAAAAAAAGCCCAGCT
TCGTTACGATGCAGAAGGATGCGGCTGCGCGGTAAGCGGTGTCCCGACAATCTGGCTGGCAGAAGAATTAACGGGACAGT
GCGAGCAGCTGGAAACGAACGGCATTCCGCTGTATATCCAATCGTCGCAAAAAGTGTTTTTTGACGATCAAATGACGATC
GATTACAATGAAAAAGCCAAAACATTGGCGCTGAAAAGCCCGGCTGAAATGCTCAGCCCCAGAATGAGCATATTAGTAAA
GTAG

Upstream 100 bases:

>100_bases
CAGAAGAAAATGCGAAGCGGTGGAAAAAAGGCAGAAACAATGCGAATGGCAGTATTGTATGCTACAATAGCGAAAATGAT
GAAAACGGGGGTTTCACCTT

Downstream 100 bases:

>100_bases
GAGACGCGAAACGTGGAACAAAAGCTGAAGGCAATGAAGAACACAGCACAAAATAAAACGTGGGTATCCTTCCTGAATCA
AAACCATCCTTATACCTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MNIHVTDAAKQALQQAFDANPGKKAQLRYDAEGCGCAVSGVPTIWLAEELTGQCEQLETNGIPLYIQSSQKVFFDDQMTI
DYNEKAKTLALKSPAEMLSPRMSILVK

Sequences:

>Translated_107_residues
MNIHVTDAAKQALQQAFDANPGKKAQLRYDAEGCGCAVSGVPTIWLAEELTGQCEQLETNGIPLYIQSSQKVFFDDQMTI
DYNEKAKTLALKSPAEMLSPRMSILVK
>Mature_107_residues
MNIHVTDAAKQALQQAFDANPGKKAQLRYDAEGCGCAVSGVPTIWLAEELTGQCEQLETNGIPLYIQSSQKVFFDDQMTI
DYNEKAKTLALKSPAEMLSPRMSILVK

Specific function: Unknown

COG id: COG4918

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQKB_BACSU (P54565)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   D69966
- RefSeq:   NP_390247.1
- ProteinModelPortal:   P54565
- SMR:   P54565
- EnsemblBacteria:   EBBACT00000002406
- GeneID:   938713
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU23660
- NMPDR:   fig|224308.1.peg.2371
- GenoList:   BSU23660
- GeneTree:   EBGT00050000001050
- HOGENOM:   HBG475659
- OMA:   EVISCPI
- ProtClustDB:   CLSK887528
- BioCyc:   BSUB:BSU23660-MONOMER
- InterPro:   IPR000361
- Gene3D:   G3DSA:2.60.300.12

Pfam domain/function: PF01521 Fe-S_biosyn; SSF89360 HesB_yadR_yfhF-like

EC number: NA

Molecular weight: Translated: 11765; Mature: 11765

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIHVTDAAKQALQQAFDANPGKKAQLRYDAEGCGCAVSGVPTIWLAEELTGQCEQLETN
CEEEECHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCEEEEHHHHCCCHHHHCCC
GIPLYIQSSQKVFFDDQMTIDYNEKAKTLALKSPAEMLSPRMSILVK
CEEEEEECCCEEEECCCEEEEECCCCEEEEECCCHHHHCCCEEEEEC
>Mature Secondary Structure
MNIHVTDAAKQALQQAFDANPGKKAQLRYDAEGCGCAVSGVPTIWLAEELTGQCEQLETN
CEEEECHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCEEEEHHHHCCCHHHHCCC
GIPLYIQSSQKVFFDDQMTIDYNEKAKTLALKSPAEMLSPRMSILVK
CEEEEEECCCEEEECCCEEEEECCCCEEEEECCCHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377