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The map label for this gene is yphA

Identifier: 16079343

GI number: 16079343

Start: 2392751

End: 2393350

Strand: Reverse

Name: yphA

Synonym: BSU22860

Alternate gene names: 16079343

Gene position: 2393350-2392751 (Counterclockwise)

Preceding gene: 255767492

Following gene: 16079342

Centisome position: 56.77

GC content: 40.0

Gene sequence:

>600_bases
ATGGAACAATTTTATTACTATTGGTCAATGTGGTTTCTGTGGGTTCTGACAACATTTATTTTTGAAAAGACGAAAAGACG
AATTGCCGTCTCTGTCTTTATTTTAACTAATATTATTCTAAGCATACATGACATCGCTTTATATTTTTCCCTGAATGCTG
CATATTTGATGTTTTTCGTTTGCGGATGTGTCTATGCCGGGTATTTGGGAATGTATCGTTTTCGTTACATCATGGTCTAT
CTGACGCTTGTTGCCGCGTATGCGTTTGTTTATCTTTTTGCATTATATGACCCGGTTTGGTTCATCATAAAACCTGAGTG
GGCTGCTGTTATATTAATAGTGCTTTTAACAGCTTCTGTTGAAAGGAATTTTGAGAAGCAGCTTGTCTTATTTGTCCTAG
GGATGTGCCAAGGCGAACTGGTGTATTCATTTGTGATCCAGAAGTTGGCCGGGGCTATGGCTGTCGGCGGCTTTCAATGG
CTGAATGCGTGTTCTGCGGGGATGATATTGCTGTTTGGCATATCTAAATACGAACACCTCGCAAGCCAGATTGGTCAGAA
AAGCAAAAGATCAAACAAAGGAGCTACCAAAATGTCATGA

Upstream 100 bases:

>100_bases
TTCTCTTGTCTGTCTTTTCCCATGATCATACTCCTTAATGTGAGATCGATTGTTTAAAAAATGTGCTTGAACTCCATACT
GGGAATATGGAGGAAGTAAA

Downstream 100 bases:

>100_bases
GTGATTACATCTATCCGATTATTGCTGGGGTCATTGCCGGAATTGCGACAAGGCTTTATATGCTGAAAACGGATTACCGC
CAGTATCCGACCTATGTTCA

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MEQFYYYWSMWFLWVLTTFIFEKTKRRIAVSVFILTNIILSIHDIALYFSLNAAYLMFFVCGCVYAGYLGMYRFRYIMVY
LTLVAAYAFVYLFALYDPVWFIIKPEWAAVILIVLLTASVERNFEKQLVLFVLGMCQGELVYSFVIQKLAGAMAVGGFQW
LNACSAGMILLFGISKYEHLASQIGQKSKRSNKGATKMS

Sequences:

>Translated_199_residues
MEQFYYYWSMWFLWVLTTFIFEKTKRRIAVSVFILTNIILSIHDIALYFSLNAAYLMFFVCGCVYAGYLGMYRFRYIMVY
LTLVAAYAFVYLFALYDPVWFIIKPEWAAVILIVLLTASVERNFEKQLVLFVLGMCQGELVYSFVIQKLAGAMAVGGFQW
LNACSAGMILLFGISKYEHLASQIGQKSKRSNKGATKMS
>Mature_199_residues
MEQFYYYWSMWFLWVLTTFIFEKTKRRIAVSVFILTNIILSIHDIALYFSLNAAYLMFFVCGCVYAGYLGMYRFRYIMVY
LTLVAAYAFVYLFALYDPVWFIIKPEWAAVILIVLLTASVERNFEKQLVLFVLGMCQGELVYSFVIQKLAGAMAVGGFQW
LNACSAGMILLFGISKYEHLASQIGQKSKRSNKGATKMS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPHA_BACSU (P50741)

Other databases:

- EMBL:   L47648
- EMBL:   AL009126
- PIR:   G69935
- RefSeq:   NP_390167.1
- EnsemblBacteria:   EBBACT00000001709
- GeneID:   938987
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22860
- NMPDR:   fig|224308.1.peg.2290
- GenoList:   BSU22860
- GeneTree:   EBGT00050000000608
- HOGENOM:   HBG338136
- OMA:   TFFMKKD
- ProtClustDB:   CLSK2518245
- BioCyc:   BSUB:BSU22860-MONOMER
- InterPro:   IPR014617
- PIRSF:   PIRSF036710

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22967; Mature: 22967

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x107ea5f8)-; HASH(0x105c4264)-; HASH(0xfd2ee40)-; HASH(0xfdabab4)-; HASH(0xf6ba3b8)-; HASH(0xffa7580)-;

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQFYYYWSMWFLWVLTTFIFEKTKRRIAVSVFILTNIILSIHDIALYFSLNAAYLMFFV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGCVYAGYLGMYRFRYIMVYLTLVAAYAFVYLFALYDPVWFIIKPEWAAVILIVLLTASV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHH
ERNFEKQLVLFVLGMCQGELVYSFVIQKLAGAMAVGGFQWLNACSAGMILLFGISKYEHL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASQIGQKSKRSNKGATKMS
HHHHHHHHHCCCCCCCCCH
>Mature Secondary Structure
MEQFYYYWSMWFLWVLTTFIFEKTKRRIAVSVFILTNIILSIHDIALYFSLNAAYLMFFV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGCVYAGYLGMYRFRYIMVYLTLVAAYAFVYLFALYDPVWFIIKPEWAAVILIVLLTASV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHH
ERNFEKQLVLFVLGMCQGELVYSFVIQKLAGAMAVGGFQWLNACSAGMILLFGISKYEHL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASQIGQKSKRSNKGATKMS
HHHHHHHHHCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377