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The map label for this gene is yphF

Identifier: 16079338

GI number: 16079338

Start: 2387854

End: 2388588

Strand: Reverse

Name: yphF

Synonym: BSU22810

Alternate gene names: 16079338

Gene position: 2388588-2387854 (Counterclockwise)

Preceding gene: 16079339

Following gene: 16079337

Centisome position: 56.66

GC content: 41.9

Gene sequence:

>735_bases
ATGGGTAAACTGAAGTGCGCAATCATTTTTGCGGCAGTCGTGTTTTTATCCGGATGTTTATATCCAAATGAACGGAAAAG
CAGTGTGCATGCCATTCCTTATCAAGACCAGCTAAAGCAGGTTCAATCTGCTGTTGATGAATTTCAAAAGGCAAATGGAG
GGCTGCTTCCTATTCAAACCAAAGATATGTCGACACCGCTATATCAAAAATATCCGATAGACTTTAACCGGTTAGCGCCA
AGATACATAGCTGAACCTCCAAGTACGGCATTTGAAAGCGGGGGAGACTATCAATACGTGCTTGTTGACGTAGAGAACGA
TCCGACTGTTAAATTAATTGATCTAAAGATGGCAGAAAAAATTCGCGATGTGAAATTGCGCATCCAAATGTATCGTCAGG
AGCATCAATATCCGCCTTACAAGGATGTGCTATCTCGTGATTTATTTACACTCGATGAGAAGAAGCTTGGGGATGGCAGC
TCTCTTACAGTGACAAGCCCAATCTCAGGGAATTCCTTGCCGCTTATGATTGACGGAGACGGAGAAATATATGCCGATTA
CCGGACTGAGCTGGCTTCTTGCCTCAAAAAAAGCAAAAAAACGTTTAAACCCGGGACTGAAATCCAGGATATGATTTGGC
ATGAAACCCCCTTTGTCCCCGCGTTTTCTGTAAAATATACGGTAAATGACAAACAGGAACCTGTTTTTTTAGAAAATGAT
ATGAAAAAGGAATGA

Upstream 100 bases:

>100_bases
ATCATTCGCATACATGTGTATGCTCATATCTGGAATTATTGTGTTTGTCGTGGTTTTTAGCGGCCCTGTCAATGAATAAA
GCTGTAAAAGGAAGTGCTGT

Downstream 100 bases:

>100_bases
ACCTTTCTCCCTTGCATACAAATAGGGAGAAAGGTTTTTTTATATTAATAGATTGAGGATGAGAAATTTTCTAAAGATGT
CATATTCAAATAGGACAACG

Product: lipoprotein

Products: NA

Alternate protein names: ORF1

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MGKLKCAIIFAAVVFLSGCLYPNERKSSVHAIPYQDQLKQVQSAVDEFQKANGGLLPIQTKDMSTPLYQKYPIDFNRLAP
RYIAEPPSTAFESGGDYQYVLVDVENDPTVKLIDLKMAEKIRDVKLRIQMYRQEHQYPPYKDVLSRDLFTLDEKKLGDGS
SLTVTSPISGNSLPLMIDGDGEIYADYRTELASCLKKSKKTFKPGTEIQDMIWHETPFVPAFSVKYTVNDKQEPVFLEND
MKKE

Sequences:

>Translated_244_residues
MGKLKCAIIFAAVVFLSGCLYPNERKSSVHAIPYQDQLKQVQSAVDEFQKANGGLLPIQTKDMSTPLYQKYPIDFNRLAP
RYIAEPPSTAFESGGDYQYVLVDVENDPTVKLIDLKMAEKIRDVKLRIQMYRQEHQYPPYKDVLSRDLFTLDEKKLGDGS
SLTVTSPISGNSLPLMIDGDGEIYADYRTELASCLKKSKKTFKPGTEIQDMIWHETPFVPAFSVKYTVNDKQEPVFLEND
MKKE
>Mature_243_residues
GKLKCAIIFAAVVFLSGCLYPNERKSSVHAIPYQDQLKQVQSAVDEFQKANGGLLPIQTKDMSTPLYQKYPIDFNRLAPR
YIAEPPSTAFESGGDYQYVLVDVENDPTVKLIDLKMAEKIRDVKLRIQMYRQEHQYPPYKDVLSRDLFTLDEKKLGDGSS
LTVTSPISGNSLPLMIDGDGEIYADYRTELASCLKKSKKTFKPGTEIQDMIWHETPFVPAFSVKYTVNDKQEPVFLENDM
KKE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPHF_BACSU (P39911)

Other databases:

- EMBL:   L47648
- EMBL:   AL009126
- EMBL:   M80926
- PIR:   C69936
- RefSeq:   NP_390162.1
- ProteinModelPortal:   P39911
- EnsemblBacteria:   EBBACT00000001668
- GeneID:   938992
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22810
- NMPDR:   fig|224308.1.peg.2285
- GenoList:   BSU22810
- GeneTree:   EBGT00050000001888
- HOGENOM:   HBG313417
- OMA:   LSGCLYP
- ProtClustDB:   CLSK873090
- BioCyc:   BSUB:BSU22810-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27748; Mature: 27617

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKLKCAIIFAAVVFLSGCLYPNERKSSVHAIPYQDQLKQVQSAVDEFQKANGGLLPIQT
CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEC
KDMSTPLYQKYPIDFNRLAPRYIAEPPSTAFESGGDYQYVLVDVENDPTVKLIDLKMAEK
CCCCCCCCEECCCCHHHCCCHHHCCCCCHHHHCCCCEEEEEEEECCCCCEEEEEHHHHHH
IRDVKLRIQMYRQEHQYPPYKDVLSRDLFTLDEKKLGDGSSLTVTSPISGNSLPLMIDGD
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCCCCCEEEECCCCCCCCEEEECCC
GEIYADYRTELASCLKKSKKTFKPGTEIQDMIWHETPFVPAFSVKYTVNDKQEPVFLEND
CCEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCEEECCC
MKKE
CCCC
>Mature Secondary Structure 
GKLKCAIIFAAVVFLSGCLYPNERKSSVHAIPYQDQLKQVQSAVDEFQKANGGLLPIQT
CCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEC
KDMSTPLYQKYPIDFNRLAPRYIAEPPSTAFESGGDYQYVLVDVENDPTVKLIDLKMAEK
CCCCCCCCEECCCCHHHCCCHHHCCCCCHHHHCCCCEEEEEEEECCCCCEEEEEHHHHHH
IRDVKLRIQMYRQEHQYPPYKDVLSRDLFTLDEKKLGDGSSLTVTSPISGNSLPLMIDGD
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCCCCCEEEECCCCCCCCEEEECCC
GEIYADYRTELASCLKKSKKTFKPGTEIQDMIWHETPFVPAFSVKYTVNDKQEPVFLEND
CCEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCEEECCC
MKKE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 1729246