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The map label for this gene is kdgT

Identifier: 16079267

GI number: 16079267

Start: 2321972

End: 2322964

Strand: Reverse

Name: kdgT

Synonym: BSU22090

Alternate gene names: 16079267

Gene position: 2322964-2321972 (Counterclockwise)

Preceding gene: 16079268

Following gene: 16079266

Centisome position: 55.1

GC content: 48.44

Gene sequence:

>993_bases
ATGAAAATCAAGGCGACAATTGAACGGGTACCTGGCGGAATGATGATTATTCCGCTATTTCTTGGAGCGGCGCTCAACAC
GTTTGCGCCTGGAACAGCGGAGTTCTTTGGAGGGTTTACGGGTGCTTTGATTACCGGAACGCTGCCGATACTGGGTGTTT
TTATCTTTTGCGTAGGAGCAACGATTGATTTTCGTTCTTCAGGCTATATCGCAAGAAAAGGAATCACGTTATTATTGGGG
AAGATCGGATTTGCGGCGCTGCTCGGCGTGATCGCAGCGCAATTTATACCTGACGATGGCATACAATCCGGCTTTTTTGC
AGGCCTTTCTGTTTTAGCAATTGTCGCGGTAATGAATGAAACGAACGGCGGACTGTATTTGGCGCTCATGAATCACATGG
GAAGAAAAGAGGATGCGGGCGCTTTCGCCTTTATCAGTACAGAATCTGGTCCTTTTATGACCATGGTGACGTTTGGTGTG
ACGGGACTTGCCGCATTCCCATGGGAAACGCTGGCAGCGACAGTCATCCCGTTTTTACTTGGATGTATACTTGGAAATCT
GGATCATGATCTCAGAGACTTATTCAGCAAGGTTGTGCCGGCGATCATTCCATTTTTCGCCTTTTCGCTCGGCAATACCT
TGAATTTTGGAATGCTGATCCAATCAGGGCTGCTCGGCATTTTTATCGGAGTTTCTGTCGTCATTTTATCGGGCAGTTCT
TTGTTTTTGCTTGATCGTTTTATTGCGCGGGGAGATGGTGTCGCGGGAGTGGCCGCTTCTTCTACGGCAGGGGCGGCTGT
AGCCGTGCCATATGCATTAGCGGAAGCGAATGCCTCATTTGCGCCAGTTGCTGAGTCGGCAACTGCAATTATCGCGACAA
GCGTTATTGTCACCTCGCTCTTAACCCCGCTGGCAACAGTGTGGGTAGATAAAAAAATCAAGCAGAAAAAGCGGAGAACA
CCTCCGCCAAAAAATCAAATGACGATCAACTGA

Upstream 100 bases:

>100_bases
GCAGCCAGTTGGGCAGCTGTTCAAAAGAGGATTTGCAGGCTGTTTTCCAAGTGTAAGTGGAATTGTTTTTTCATAACCGG
AGGATGGGAGAATCCACAAT

Downstream 100 bases:

>100_bases
ATAAAAAGGCTGCCACAAAACATACCGGCAGCCTTTTATACAAACAATTTGACTTTCATACCCCCTTCCATTAGCCTGTA
ATGGAACGGCTAGAATAGGG

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKIKATIERVPGGMMIIPLFLGAALNTFAPGTAEFFGGFTGALITGTLPILGVFIFCVGATIDFRSSGYIARKGITLLLG
KIGFAALLGVIAAQFIPDDGIQSGFFAGLSVLAIVAVMNETNGGLYLALMNHMGRKEDAGAFAFISTESGPFMTMVTFGV
TGLAAFPWETLAATVIPFLLGCILGNLDHDLRDLFSKVVPAIIPFFAFSLGNTLNFGMLIQSGLLGIFIGVSVVILSGSS
LFLLDRFIARGDGVAGVAASSTAGAAVAVPYALAEANASFAPVAESATAIIATSVIVTSLLTPLATVWVDKKIKQKKRRT
PPPKNQMTIN

Sequences:

>Translated_330_residues
MKIKATIERVPGGMMIIPLFLGAALNTFAPGTAEFFGGFTGALITGTLPILGVFIFCVGATIDFRSSGYIARKGITLLLG
KIGFAALLGVIAAQFIPDDGIQSGFFAGLSVLAIVAVMNETNGGLYLALMNHMGRKEDAGAFAFISTESGPFMTMVTFGV
TGLAAFPWETLAATVIPFLLGCILGNLDHDLRDLFSKVVPAIIPFFAFSLGNTLNFGMLIQSGLLGIFIGVSVVILSGSS
LFLLDRFIARGDGVAGVAASSTAGAAVAVPYALAEANASFAPVAESATAIIATSVIVTSLLTPLATVWVDKKIKQKKRRT
PPPKNQMTIN
>Mature_330_residues
MKIKATIERVPGGMMIIPLFLGAALNTFAPGTAEFFGGFTGALITGTLPILGVFIFCVGATIDFRSSGYIARKGITLLLG
KIGFAALLGVIAAQFIPDDGIQSGFFAGLSVLAIVAVMNETNGGLYLALMNHMGRKEDAGAFAFISTESGPFMTMVTFGV
TGLAAFPWETLAATVIPFLLGCILGNLDHDLRDLFSKVVPAIIPFFAFSLGNTLNFGMLIQSGLLGIFIGVSVVILSGSS
LFLLDRFIARGDGVAGVAASSTAGAAVAVPYALAEANASFAPVAESATAIIATSVIVTSLLTPLATVWVDKKIKQKKRRT
PPPKNQMTIN

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family

Homologues:

Organism=Escherichia coli, GI87082349, Length=319, Percent_Identity=51.0971786833856, Blast_Score=299, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDGT_BACSU (P50847)

Other databases:

- EMBL:   L47838
- EMBL:   AL009126
- PIR:   C69648
- RefSeq:   NP_390091.1
- ProteinModelPortal:   P50847
- EnsemblBacteria:   EBBACT00000004096
- GeneID:   939065
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22090
- NMPDR:   fig|224308.1.peg.2214
- GenoList:   BSU22090
- GeneTree:   EBGT00050000006148
- HOGENOM:   HBG322377
- PhylomeDB:   P50847
- ProtClustDB:   PRK05274
- BioCyc:   BSUB:BSU22090-MONOMER
- HAMAP:   MF_00070
- InterPro:   IPR004684
- InterPro:   IPR018395
- ProDom:   PD024513
- TIGRFAMs:   TIGR00793

Pfam domain/function: PF03812 KdgT

EC number: NA

Molecular weight: Translated: 34319; Mature: 34319

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x105ac1cc)-; HASH(0x106d0170)-; HASH(0x106db76c)-; HASH(0x106d63d0)-; HASH(0x102dc474)-; HASH(0xebdc75c)-; HASH(0x106d00f8)-; HASH(0xe62556c)-; HASH(0x106d8ed4)-; HASH(0x106d9048)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKATIERVPGGMMIIPLFLGAALNTFAPGTAEFFGGFTGALITGTLPILGVFIFCVGA
CCCHHHHHHCCCCEEHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
TIDFRSSGYIARKGITLLLGKIGFAALLGVIAAQFIPDDGIQSGFFAGLSVLAIVAVMNE
CEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC
TNGGLYLALMNHMGRKEDAGAFAFISTESGPFMTMVTFGVTGLAAFPWETLAATVIPFLL
CCCCEEEEEHHHCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHH
GCILGNLDHDLRDLFSKVVPAIIPFFAFSLGNTLNFGMLIQSGLLGIFIGVSVVILSGSS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
LFLLDRFIARGDGVAGVAASSTAGAAVAVPYALAEANASFAPVAESATAIIATSVIVTSL
HHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LTPLATVWVDKKIKQKKRRTPPPKNQMTIN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
>Mature Secondary Structure
MKIKATIERVPGGMMIIPLFLGAALNTFAPGTAEFFGGFTGALITGTLPILGVFIFCVGA
CCCHHHHHHCCCCEEHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
TIDFRSSGYIARKGITLLLGKIGFAALLGVIAAQFIPDDGIQSGFFAGLSVLAIVAVMNE
CEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC
TNGGLYLALMNHMGRKEDAGAFAFISTESGPFMTMVTFGVTGLAAFPWETLAATVIPFLL
CCCCEEEEEHHHCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHH
GCILGNLDHDLRDLFSKVVPAIIPFFAFSLGNTLNFGMLIQSGLLGIFIGVSVVILSGSS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
LFLLDRFIARGDGVAGVAASSTAGAAVAVPYALAEANASFAPVAESATAIIATSVIVTSL
HHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LTPLATVWVDKKIKQKKRRTPPPKNQMTIN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377