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The map label for this gene is ypgR

Identifier: 16079247

GI number: 16079247

Start: 2302727

End: 2303860

Strand: Reverse

Name: ypgR

Synonym: BSU21880

Alternate gene names: 16079247

Gene position: 2303860-2302727 (Counterclockwise)

Preceding gene: 16079248

Following gene: 255767479

Centisome position: 54.65

GC content: 45.41

Gene sequence:

>1134_bases
ATGAAGATAAAATCAATTGAACCTACACCAAGCCCGAATACAATGAAAGTCATCTTAACGGAAGAGCTTCCGGCGGGCAA
AAGCAATAACTATAAACCTGAGCAAGCAGAAGGCGCACCGCTTGTTATAGCGGAAATCCTTAAAATAGATGGAGTTAAAG
GGGTATATCACGTCGCAGATTTTCTTGCTGTTGAACGGAATGCAAGATACGACTGGAAAGACATTTTACCGCAAGTCCGC
ACTGCATTTGGGATGGAAAGTGCTGAAAGCGCAGAAGAAAATCGTTCTGATCAAGAATCTTTTGGAGAGGTAAAAGTTTT
TGTGCAGATGTTCAGCGGCATTCCTATGCAAGTTAAATTAACCGATGGAGAGCGGGAAGAACGCTTCGGCTTACCTGAAC
GCTTTCAGCAGGCGATCTTAAAACTTAGATCTGAAGCTTCCAATGTTGTGTTTGAGCGGGCTTGGAAAGAACAAGGTGTC
AGATTCGGTGACTTTGATGAAATCGGCCATGATGTGACAGAAGAGCTTCAAGCGGCATACAGTGATGAACGGCTGAAACG
ACTGACTGAAGCAGCCGCTCAAGGAAAGGGCGAAGCAAAACAAGCTGTACAGCGCAAAGCGTATAAAGTAACGCTTGATA
TGCTGGATGATGAGGACTGGAAAAAGCGTTATGCACACTTGGAACAGATGGATCCGAAAGAAGAGGATATCCCGGTTTTA
CAGAAGGCATTGGATGATCCAAAGGTGTCCATCAGAAGACAGGCTGTTGTGTACTTAGGAATGATTGAAACACCTGATGT
TCTTCCTCTATTGTATAAAGCACTTGAGGACAAAGCTGTATCAGTCAGAAGAACGGCCGGAGACTGCCTGTCTGATATCG
GCGATCCTCAAGCCATTCCTGCTATGATCAAGTCATTAAGCGACTCCAGCAAGCTTGTTCGCTGGCGTGCCGCCATGTTC
CTGTACGAAGTCGGCGATGAAAGTGCAATTGAAGCTTTGCGCGCTGCCGAAGATGACCCCGAATTTGAGGTCAGCCTTCA
AGTCAAAATGGCGCTTGAACGTATTGAGCATGGAGAAGAAGCAAAAGGTTCTGTTTGGAAACAAATGACGGAAAGCAGAA
AAAAAGGCGAATAA

Upstream 100 bases:

>100_bases
TAGAAAAAGACATACCCGGGATTGATGCCGAAACGTCGTAATAGAAGGCTTGGAGCGACTATGATAGAATAAGTCACAGA
TATGCTATAGGAGGACGATC

Downstream 100 bases:

>100_bases
AGATAAAAAAGGTGCAGATCATGCACCTTTTTTATGTGAATTCACTTTTTATAAAAATTATTTCGAATATTGTTGAAAAA
TATCCGAAAACTATTTATAG

Product: lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPEQAEGAPLVIAEILKIDGVKGVYHVADFLAVERNARYDWKDILPQVR
TAFGMESAESAEENRSDQESFGEVKVFVQMFSGIPMQVKLTDGEREERFGLPERFQQAILKLRSEASNVVFERAWKEQGV
RFGDFDEIGHDVTEELQAAYSDERLKRLTEAAAQGKGEAKQAVQRKAYKVTLDMLDDEDWKKRYAHLEQMDPKEEDIPVL
QKALDDPKVSIRRQAVVYLGMIETPDVLPLLYKALEDKAVSVRRTAGDCLSDIGDPQAIPAMIKSLSDSSKLVRWRAAMF
LYEVGDESAIEALRAAEDDPEFEVSLQVKMALERIEHGEEAKGSVWKQMTESRKKGE

Sequences:

>Translated_377_residues
MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPEQAEGAPLVIAEILKIDGVKGVYHVADFLAVERNARYDWKDILPQVR
TAFGMESAESAEENRSDQESFGEVKVFVQMFSGIPMQVKLTDGEREERFGLPERFQQAILKLRSEASNVVFERAWKEQGV
RFGDFDEIGHDVTEELQAAYSDERLKRLTEAAAQGKGEAKQAVQRKAYKVTLDMLDDEDWKKRYAHLEQMDPKEEDIPVL
QKALDDPKVSIRRQAVVYLGMIETPDVLPLLYKALEDKAVSVRRTAGDCLSDIGDPQAIPAMIKSLSDSSKLVRWRAAMF
LYEVGDESAIEALRAAEDDPEFEVSLQVKMALERIEHGEEAKGSVWKQMTESRKKGE
>Mature_377_residues
MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPEQAEGAPLVIAEILKIDGVKGVYHVADFLAVERNARYDWKDILPQVR
TAFGMESAESAEENRSDQESFGEVKVFVQMFSGIPMQVKLTDGEREERFGLPERFQQAILKLRSEASNVVFERAWKEQGV
RFGDFDEIGHDVTEELQAAYSDERLKRLTEAAAQGKGEAKQAVQRKAYKVTLDMLDDEDWKKRYAHLEQMDPKEEDIPVL
QKALDDPKVSIRRQAVVYLGMIETPDVLPLLYKALEDKAVSVRRTAGDCLSDIGDPQAIPAMIKSLSDSSKLVRWRAAMF
LYEVGDESAIEALRAAEDDPEFEVSLQVKMALERIEHGEEAKGSVWKQMTESRKKGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPGR_BACSU (P54169)

Other databases:

- EMBL:   L77246
- EMBL:   AL009126
- PIR:   F69935
- RefSeq:   NP_390071.1
- ProteinModelPortal:   P54169
- EnsemblBacteria:   EBBACT00000001382
- GeneID:   939082
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21880
- NMPDR:   fig|224308.1.peg.2194
- GenoList:   BSU21880
- GeneTree:   EBGT00050000002846
- HOGENOM:   HBG313586
- OMA:   AMFLYEV
- ProtClustDB:   CLSK873110
- BioCyc:   BSUB:BSU21880-MONOMER
- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR014824
- InterPro:   IPR004155
- Gene3D:   G3DSA:1.25.10.10
- Gene3D:   G3DSA:3.30.1370.70
- SMART:   SM00567
- SMART:   SM00932

Pfam domain/function: PF03130 HEAT_PBS; PF08712 Nfu_N; SSF48371 ARM-type_fold; SSF110836 NIF_FeS_clus_asmbl_NifU-like_N

EC number: NA

Molecular weight: Translated: 42569; Mature: 42569

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPEQAEGAPLVIAEILKIDGVKGVYHVAD
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
FLAVERNARYDWKDILPQVRTAFGMESAESAEENRSDQESFGEVKVFVQMFSGIPMQVKL
HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEE
TDGEREERFGLPERFQQAILKLRSEASNVVFERAWKEQGVRFGDFDEIGHDVTEELQAAY
CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
SDERLKRLTEAAAQGKGEAKQAVQRKAYKVTLDMLDDEDWKKRYAHLEQMDPKEEDIPVL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEHHHHCCHHHHHHHHHHHHCCCCCCCHHHH
QKALDDPKVSIRRQAVVYLGMIETPDVLPLLYKALEDKAVSVRRTAGDCLSDIGDPQAIP
HHHCCCCHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AMIKSLSDSSKLVRWRAAMFLYEVGDESAIEALRAAEDDPEFEVSLQVKMALERIEHGEE
HHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCC
AKGSVWKQMTESRKKGE
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPEQAEGAPLVIAEILKIDGVKGVYHVAD
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
FLAVERNARYDWKDILPQVRTAFGMESAESAEENRSDQESFGEVKVFVQMFSGIPMQVKL
HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEE
TDGEREERFGLPERFQQAILKLRSEASNVVFERAWKEQGVRFGDFDEIGHDVTEELQAAY
CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
SDERLKRLTEAAAQGKGEAKQAVQRKAYKVTLDMLDDEDWKKRYAHLEQMDPKEEDIPVL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEHHHHCCHHHHHHHHHHHHCCCCCCCHHHH
QKALDDPKVSIRRQAVVYLGMIETPDVLPLLYKALEDKAVSVRRTAGDCLSDIGDPQAIP
HHHCCCCHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AMIKSLSDSSKLVRWRAAMFLYEVGDESAIEALRAAEDDPEFEVSLQVKMALERIEHGEE
HHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCC
AKGSVWKQMTESRKKGE
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377