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The map label for this gene is ypmR

Identifier: 16079233

GI number: 16079233

Start: 2290858

End: 2291625

Strand: Reverse

Name: ypmR

Synonym: BSU21740

Alternate gene names: 16079233

Gene position: 2291625-2290858 (Counterclockwise)

Preceding gene: 255767476

Following gene: 16079232

Centisome position: 54.36

GC content: 39.32

Gene sequence:

>768_bases
TTGAAGCTGCGCATTTTTTCAATCATGGCCAGTTTGATTTTGCTTCTTACTGCGTGTACGAGCATACGTACATCATCTGA
GGGAAAACAAAAAGCCCATGAAACGAAAACAAAAGAACACATTGTCATAGCGGCTGTCGGAGATTCGCTGACAGAAGGAG
TCGGAGATCCCGACGGAAAGGGATATGTCGGCAAGGTGGCGGATTCTATCCGGTCAGATAAACAAGTCAAAACGGTCGAC
GTGAAAAATTATGCTGTAAAAGGGAACCGTTCGGATGATTTATTAGAAAAACTAAAAGATAAAAAGGTTCAAAAAGGCAT
AAAGGACGCAGATTATGTCTTTTTTACAATTGGCGGTAATGATTTGATGAAAATCCTTCGCCAAAACTTTCTGCAATTAA
CCGTTGAACCGTTTCAGGAAGCGGAAAAACCGTACGAAAAGCGCTTTGAAAAAATCATTTCTGAAATTCGCGAGCTGAAT
GATCACGCTGAGCTGATTTATGTCAGCATGTACAATCCGTTTACGTTTACATTATCAGAACTAAATGAAATAAATGGTGT
CGTCACGGATTGGAACCATATTGCTGAAAAAGAGCTGAAAAAAGATAAACATGCAAAAATCGTCCATATCGAAGATTTGT
TTAATCAAAAAAGTGACAGCAGCCGAATTTCTGAGGAAGATGATTTTCATCCTAATGGTACGGGTTATTCTCTTATCGCA
AAGCGCGTCTATCAAGCCATTAAAAAAGAAGGATTACCGAAAGAGTAG

Upstream 100 bases:

>100_bases
AGTCAGCCAGTACACTCAAGTAAGCTAAGAGACTAGGCATTTGCAAATCTTCTAAAACATGATACACTTTCCACTAGTAG
AATGGGAAGGAGCAACAAGA

Downstream 100 bases:

>100_bases
GGTGACAGCATGAATAAGTGGAAGCGACTGTTTTTTATATTGCTTGCAATCAATTTTATCCTCGCCGCCGGGTTTGTGGC
ACTTGTTTTGCTTCCGGGGG

Product: exported lipase/acylhydrolase (lipoprotein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKLRIFSIMASLILLLTACTSIRTSSEGKQKAHETKTKEHIVIAAVGDSLTEGVGDPDGKGYVGKVADSIRSDKQVKTVD
VKNYAVKGNRSDDLLEKLKDKKVQKGIKDADYVFFTIGGNDLMKILRQNFLQLTVEPFQEAEKPYEKRFEKIISEIRELN
DHAELIYVSMYNPFTFTLSELNEINGVVTDWNHIAEKELKKDKHAKIVHIEDLFNQKSDSSRISEEDDFHPNGTGYSLIA
KRVYQAIKKEGLPKE

Sequences:

>Translated_255_residues
MKLRIFSIMASLILLLTACTSIRTSSEGKQKAHETKTKEHIVIAAVGDSLTEGVGDPDGKGYVGKVADSIRSDKQVKTVD
VKNYAVKGNRSDDLLEKLKDKKVQKGIKDADYVFFTIGGNDLMKILRQNFLQLTVEPFQEAEKPYEKRFEKIISEIRELN
DHAELIYVSMYNPFTFTLSELNEINGVVTDWNHIAEKELKKDKHAKIVHIEDLFNQKSDSSRISEEDDFHPNGTGYSLIA
KRVYQAIKKEGLPKE
>Mature_255_residues
MKLRIFSIMASLILLLTACTSIRTSSEGKQKAHETKTKEHIVIAAVGDSLTEGVGDPDGKGYVGKVADSIRSDKQVKTVD
VKNYAVKGNRSDDLLEKLKDKKVQKGIKDADYVFFTIGGNDLMKILRQNFLQLTVEPFQEAEKPYEKRFEKIISEIRELN
DHAELIYVSMYNPFTFTLSELNEINGVVTDWNHIAEKELKKDKHAKIVHIEDLFNQKSDSSRISEEDDFHPNGTGYSLIA
KRVYQAIKKEGLPKE

Specific function: Unknown

COG id: COG2755

COG function: function code E; Lysophospholipase L1 and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPMR_BACSU (P40766)

Other databases:

- EMBL:   L77246
- EMBL:   AL009126
- EMBL:   M22910
- PIR:   A69939
- RefSeq:   NP_390057.1
- ProteinModelPortal:   P40766
- EnsemblBacteria:   EBBACT00000003942
- GeneID:   939097
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21740
- NMPDR:   fig|224308.1.peg.2180
- GenoList:   BSU21740
- GeneTree:   EBGT00050000000506
- HOGENOM:   HBG475189
- OMA:   EDHFHPN
- ProtClustDB:   CLSK887464
- BioCyc:   BSUB:BSU21740-MONOMER
- InterPro:   IPR013830
- InterPro:   IPR013831
- InterPro:   IPR001087
- Gene3D:   G3DSA:3.40.50.1110

Pfam domain/function: PF00657 Lipase_GDSL; SSF52266 Esterase_SGNH_hydro-type

EC number: NA

Molecular weight: Translated: 28922; Mature: 28922

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRIFSIMASLILLLTACTSIRTSSEGKQKAHETKTKEHIVIAAVGDSLTEGVGDPDGK
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCC
GYVGKVADSIRSDKQVKTVDVKNYAVKGNRSDDLLEKLKDKKVQKGIKDADYVFFTIGGN
CHHHHHHHHHHCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCH
DLMKILRQNFLQLTVEPFQEAEKPYEKRFEKIISEIRELNDHAELIYVSMYNPFTFTLSE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
LNEINGVVTDWNHIAEKELKKDKHAKIVHIEDLFNQKSDSSRISEEDDFHPNGTGYSLIA
HHHHCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
KRVYQAIKKEGLPKE
HHHHHHHHHCCCCCC
>Mature Secondary Structure
MKLRIFSIMASLILLLTACTSIRTSSEGKQKAHETKTKEHIVIAAVGDSLTEGVGDPDGK
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCC
GYVGKVADSIRSDKQVKTVDVKNYAVKGNRSDDLLEKLKDKKVQKGIKDADYVFFTIGGN
CHHHHHHHHHHCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCH
DLMKILRQNFLQLTVEPFQEAEKPYEKRFEKIISEIRELNDHAELIYVSMYNPFTFTLSE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
LNEINGVVTDWNHIAEKELKKDKHAKIVHIEDLFNQKSDSSRISEEDDFHPNGTGYSLIA
HHHHCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
KRVYQAIKKEGLPKE
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 3145906