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The map label for this gene is yonN

Identifier: 16079164

GI number: 16079164

Start: 2225337

End: 2225615

Strand: Direct

Name: yonN

Synonym: BSU21050

Alternate gene names: 16079164

Gene position: 2225337-2225615 (Clockwise)

Preceding gene: 16079163

Following gene: 16079165

Centisome position: 52.79

GC content: 40.14

Gene sequence:

>279_bases
ATGAATAAAACAGAACTAATCGCTAAAGTGGCAGAAAAACAAGGGGTATCTAAAAAAGAAGGAGCTCCCAGTGTCGAAAA
AGTCTTTGACACTATTTCAGAGGCATTAAAAAGTGGAGAAAAAGTAAGTATTCCTGGTTTCGGAACATTTGAAGTTCGTG
AACGCGCAGCTCGTAAAGGGAGAAATCCCCAGACAGGAGAGGAAATTGATATTCCGGCTACAAAAGCACCTGCATTTAAG
CCAGCAAAAGCACTTAAAGACGCAGTCAAAGCTAAATAA

Upstream 100 bases:

>100_bases
TTCCACATAAAAGGGCTAGTACGTTTCCCCCGTCTATATAAAAGACAATCTTTATTGTTCATTTAGAATAAATTTAATAA
TACTTAGGAGGAAATTGATT

Downstream 100 bases:

>100_bases
TCAGTTAATGAGGACGACAGGAAAGGCTACCTGCACGCTTTGTCACAAAGAGCTTATGCTCCTAAAAGTGGCAGAGTTGG
AAGTTATGGAGGAAATTGTC

Product: HU-related DNA-binding protein; phage SPbeta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKGRNPQTGEEIDIPATKAPAFK
PAKALKDAVKAK

Sequences:

>Translated_92_residues
MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKGRNPQTGEEIDIPATKAPAFK
PAKALKDAVKAK
>Mature_92_residues
MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKGRNPQTGEEIDIPATKAPAFK
PAKALKDAVKAK

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=51.685393258427, Blast_Score=99, Evalue=5e-23,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=54.4444444444444, Blast_Score=97, Evalue=1e-22,
Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=40.4494382022472, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1787141, Length=88, Percent_Identity=37.5, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): DBH2_BACSU (P68573)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_389988.1
- ProteinModelPortal:   P68573
- SMR:   P68573
- EnsemblBacteria:   EBBACT00000000450
- GeneID:   939170
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21050
- NMPDR:   fig|224308.1.peg.2111
- GenoList:   BSU21050
- GeneTree:   EBGT00050000002314
- HOGENOM:   HBG705085
- OMA:   NAVMESV
- PhylomeDB:   P68573
- BioCyc:   BSUB:BSU21050-MONOMER
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 9852; Mature: 9852

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHCC
RNPQTGEEIDIPATKAPAFKPAKALKDAVKAK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHCC
RNPQTGEEIDIPATKAPAFKPAKALKDAVKAK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377