Click here to switch to the map view.

The map label for this gene is yonR

Identifier: 16079161

GI number: 16079161

Start: 2221061

End: 2221387

Strand: Reverse

Name: yonR

Synonym: BSU21020

Alternate gene names: 16079161

Gene position: 2221387-2221061 (Counterclockwise)

Preceding gene: 16079167

Following gene: 16079160

Centisome position: 52.69

GC content: 35.17

Gene sequence:

>327_bases
ATGTTTGGAGAACGTTTAAAAAAATGCCGTACCTCCAAAGGATATAGCCAGCAACGGATGGCGGATTTCTTAGGAATTAC
GAGACAGGGATATGGGAAATATGAAATTGGTAAGGCTGAACCTGATTTAAAAACCCTTACTAAATTAAGCAATATATTAG
GAGTATCTACTGACTTTCTTCTAAAAGGCACACATGCACAATTTGATCTCGATGAGATATTAAATGATCCAGAGACTTTA
ATTGCTGGATATAATGGAATGATCTCGGAAGAGCAAGCTAAAGAGTTACTGTATTATCTTTTAAAAAAAGAGTTCGAAGA
ACATTAG

Upstream 100 bases:

>100_bases
AACCTTTAGTTTCTCCCGATATATTTTATGAAACTTTTTGCTTCTTTTTGTTTACGAAACTATTTGCTTATATAATAATT
GTCAAAGTGAGGAACCTACT

Downstream 100 bases:

>100_bases
TAGCTATTCTTAATTCTTCTGGTAAAACATTTGTTTAATAAAAAGAAAACAAACTGTTTAACACCATTAAGTTAAATGAA
AGAAAAGAAAAAATAACTGG

Product: Xre family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MFGERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFLLKGTHAQFDLDEILNDPETL
IAGYNGMISEEQAKELLYYLLKKEFEEH

Sequences:

>Translated_108_residues
MFGERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFLLKGTHAQFDLDEILNDPETL
IAGYNGMISEEQAKELLYYLLKKEFEEH
>Mature_108_residues
MFGERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFLLKGTHAQFDLDEILNDPETL
IAGYNGMISEEQAKELLYYLLKKEFEEH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YONR_BACSU (O31943)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_389985.1
- HSSP:   P16117
- ProteinModelPortal:   O31943
- SMR:   O31943
- EnsemblBacteria:   EBBACT00000003224
- GeneID:   939169
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21020
- NMPDR:   fig|224308.1.peg.2108
- GenoList:   BSU21020
- GeneTree:   EBGT00070000032227
- HOGENOM:   HBG727458
- BioCyc:   BSUB:BSU21020-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 12371; Mature: 12371

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFL
CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
LKGTHAQFDLDEILNDPETLIAGYNGMISEEQAKELLYYLLKKEFEEH
CCCCCCCCCHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFGERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFL
CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
LKGTHAQFDLDEILNDPETLIAGYNGMISEEQAKELLYYLLKKEFEEH
CCCCCCCCCHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377