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The map label for this gene is yorK

Identifier: 16079094

GI number: 16079094

Start: 2179526

End: 2181256

Strand: Reverse

Name: yorK

Synonym: BSU20350

Alternate gene names: 16079094

Gene position: 2181256-2179526 (Counterclockwise)

Preceding gene: 16079095

Following gene: 16079093

Centisome position: 51.74

GC content: 34.14

Gene sequence:

>1731_bases
ATGGAGTATAGACTAATTGGCGACAATGATTATAATTTCGATCCTTTAGCTACTATCTTAAAAAATAGAGGCATAGAAGA
TCCAAAGTTGTTTGTTAATGTTGATCAAAGTTCAGTTATTCATTATTCAAAGCTTAATAATATTGATAAAGCTGCAGATT
GTCTTATCAGGCATTTAAATAATAAAAATAAATTGTTTGTTCAGGTAGACAGTGATGTTGATGGATACACATCCAGCTCA
ATCATTATAAATTACATAAAGAAGATTTGTCCGAAAGCTAATATACACTACAGAATTCAAGATGGGAAAGAGCATGGGAT
TTTTATTGATACAATTCCTGATGATGTTGACTTAGTCATAATCCCAGATGCAGGTTCAAGTCAATTTGAGGAACATGAGG
CTCTTAATAAGAGAGGCACAGAAATAATTGTTATTGATCACCATGAATGTGAACGAGTGTCTGAACATGCGATCGTAGTA
AATAATCAACTTTCGCCTAATTATTCGAATAAAACTCTGACAGGTGCAGGAATGGCCTATAAATTTTGCCAGGCAATTGA
TGAAAAGCTAAATAAAAATGAAGCCGAACAATTCTTAGACCTTGTATCTATTGGTAACATTGCTGATTCGGCTGATTCAA
GAAACCTTGAAACCAGGTATTTTATGAATGAAGGCTTGAAGAAAATAAAACATCCATTATTAAAGAAGCTGTTTAAGAAG
CAAGAGTTTTCAACCAAGGGTGACAAGAGCATACAGAATACACAGTTCTTTATTAACCCTTTAATTAACGCTGCCATTAG
GGTTGGAAGCAGTGAAGAAAAAGATCAAATGATGAGAGCATTCCTCCTTTCTAAAGAAAAGGTTCCCTACAAAAAACGTG
GGCAAAGTGAAACTGAGCTTGTATCAATACATGAAGACACAGTTAGGATTCTAGGAAATCTAAAAGCAAAGCAGAAACGG
ATTGTAGATGCAGCTGGAGTGGAAATTAAAAATAGAATAGAAGAGAAAAGTTTAACAGCGAATAAAGTACTCATTGTTTA
CATTGAAGGAATTCTAGATAAAAGCCTAACTGGACTGGTGGCCAATCAGCTTGCAGAAGAATATAAAAAGCCGGTCTTGT
TAGCCAGAAACGATCCCGAAAAAGGTAAAGATATCTTGAGTGGCTCTATACGAGGATATGATAAAGGGTTTATAAAGGAT
TTTAAGAAAGAGCTTATAGATACTGGATTATTTGAGTTTGTTGAAGGTCACCCAAATGCAGCGGGCTTTGCAATTAAACG
ACAGAACTTAATCCTGGTGAACAAAGTGCTGAATGAAAAATTTAAAGACATAAATATCGAAGAAGATATTCAGAATGTTG
ATTTTGAGATCCCAGCAAAACGATTGAGAAAAGAATTTATCCTTCAACTTGATGGTTACAAAGACTATTGGGGTTACAAA
GTTGAAGAACCCTTAATAGCTATAACGGATCTTGAAATTGAAGTCGAACAAATTGAGCATTTAGGGAAAAAGAATAAGAC
AACTGTTAAATTTAAGCATGGCGATATTGAATACATAAGGTTTAAAAGTGATGAGAATTACTTTAATCAGCTTACTGCAT
CAAATGGAACGTTAGTCATTAATGTAATTGGCAAAGCAAAGGCAAATGAATACAAAGGCAAGAAAACACCTCAAATCGAG
ATTTATGAATTGGAGGTGGTTCGCACAAAACAAAAAGAACTTGTGTTTTAA

Upstream 100 bases:

>100_bases
TACTGGATTATAAGGACAGCCCAGCGGACAAGGGAAAGGAAACTCTAGAGGAGCTAATGAGAAGGAAAATTGAGATTGGC
ACAGATGAAGGGGGAATTTA

Downstream 100 bases:

>100_bases
GGGGGAGAAAAGTTGATAGGATGTCACTGTCACACAGATAGGAGTAACATAAGGCTTCTAGACTCAACAAACTCAGTTAA
AGAACTGCTCAAAACTGCAG

Product: single-strand DNA-specific exonuclease; phage SPbeta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 576; Mature: 576

Protein sequence:

>576_residues
MEYRLIGDNDYNFDPLATILKNRGIEDPKLFVNVDQSSVIHYSKLNNIDKAADCLIRHLNNKNKLFVQVDSDVDGYTSSS
IIINYIKKICPKANIHYRIQDGKEHGIFIDTIPDDVDLVIIPDAGSSQFEEHEALNKRGTEIIVIDHHECERVSEHAIVV
NNQLSPNYSNKTLTGAGMAYKFCQAIDEKLNKNEAEQFLDLVSIGNIADSADSRNLETRYFMNEGLKKIKHPLLKKLFKK
QEFSTKGDKSIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEKVPYKKRGQSETELVSIHEDTVRILGNLKAKQKR
IVDAAGVEIKNRIEEKSLTANKVLIVYIEGILDKSLTGLVANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKD
FKKELIDTGLFEFVEGHPNAAGFAIKRQNLILVNKVLNEKFKDINIEEDIQNVDFEIPAKRLRKEFILQLDGYKDYWGYK
VEEPLIAITDLEIEVEQIEHLGKKNKTTVKFKHGDIEYIRFKSDENYFNQLTASNGTLVINVIGKAKANEYKGKKTPQIE
IYELEVVRTKQKELVF

Sequences:

>Translated_576_residues
MEYRLIGDNDYNFDPLATILKNRGIEDPKLFVNVDQSSVIHYSKLNNIDKAADCLIRHLNNKNKLFVQVDSDVDGYTSSS
IIINYIKKICPKANIHYRIQDGKEHGIFIDTIPDDVDLVIIPDAGSSQFEEHEALNKRGTEIIVIDHHECERVSEHAIVV
NNQLSPNYSNKTLTGAGMAYKFCQAIDEKLNKNEAEQFLDLVSIGNIADSADSRNLETRYFMNEGLKKIKHPLLKKLFKK
QEFSTKGDKSIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEKVPYKKRGQSETELVSIHEDTVRILGNLKAKQKR
IVDAAGVEIKNRIEEKSLTANKVLIVYIEGILDKSLTGLVANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKD
FKKELIDTGLFEFVEGHPNAAGFAIKRQNLILVNKVLNEKFKDINIEEDIQNVDFEIPAKRLRKEFILQLDGYKDYWGYK
VEEPLIAITDLEIEVEQIEHLGKKNKTTVKFKHGDIEYIRFKSDENYFNQLTASNGTLVINVIGKAKANEYKGKKTPQIE
IYELEVVRTKQKELVF
>Mature_576_residues
MEYRLIGDNDYNFDPLATILKNRGIEDPKLFVNVDQSSVIHYSKLNNIDKAADCLIRHLNNKNKLFVQVDSDVDGYTSSS
IIINYIKKICPKANIHYRIQDGKEHGIFIDTIPDDVDLVIIPDAGSSQFEEHEALNKRGTEIIVIDHHECERVSEHAIVV
NNQLSPNYSNKTLTGAGMAYKFCQAIDEKLNKNEAEQFLDLVSIGNIADSADSRNLETRYFMNEGLKKIKHPLLKKLFKK
QEFSTKGDKSIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEKVPYKKRGQSETELVSIHEDTVRILGNLKAKQKR
IVDAAGVEIKNRIEEKSLTANKVLIVYIEGILDKSLTGLVANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKD
FKKELIDTGLFEFVEGHPNAAGFAIKRQNLILVNKVLNEKFKDINIEEDIQNVDFEIPAKRLRKEFILQLDGYKDYWGYK
VEEPLIAITDLEIEVEQIEHLGKKNKTTVKFKHGDIEYIRFKSDENYFNQLTASNGTLVINVIGKAKANEYKGKKTPQIE
IYELEVVRTKQKELVF

Specific function: Putative single-stranded-DNA-specific exonuclease (Potential)

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recJ family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YORK_BACSU (O31903)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_389917.1
- ProteinModelPortal:   O31903
- PhosSite:   O31903
- EnsemblBacteria:   EBBACT00000000035
- GeneID:   939545
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU20350
- NMPDR:   fig|224308.1.peg.2040
- GenoList:   BSU20350
- GeneTree:   EBGT00050000002735
- OMA:   ANIHYRI
- ProtClustDB:   CLSK254585
- BioCyc:   BSUB:BSU20350-MONOMER
- InterPro:   IPR001667
- InterPro:   IPR004610
- TIGRFAMs:   TIGR00644

Pfam domain/function: PF01368 DHH

EC number: 3.1.-.- [C]

Molecular weight: Translated: 65775; Mature: 65775

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYRLIGDNDYNFDPLATILKNRGIEDPKLFVNVDQSSVIHYSKLNNIDKAADCLIRHLN
CCEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEEHHHHCCHHHHHHHHHHHCC
NKNKLFVQVDSDVDGYTSSSIIINYIKKICPKANIHYRIQDGKEHGIFIDTIPDDVDLVI
CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEECCCCCCEEE
IPDAGSSQFEEHEALNKRGTEIIVIDHHECERVSEHAIVVNNQLSPNYSNKTLTGAGMAY
EECCCCCHHHHHHHHHHCCCEEEEEECHHHHHHCCCEEEEECCCCCCCCCCEEECCHHHH
KFCQAIDEKLNKNEAEQFLDLVSIGNIADSADSRNLETRYFMNEGLKKIKHPLLKKLFKK
HHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QEFSTKGDKSIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEKVPYKKRGQSETEL
HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCEE
VSIHEDTVRILGNLKAKQKRIVDAAGVEIKNRIEEKSLTANKVLIVYIEGILDKSLTGLV
EEEHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHH
ANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKDFKKELIDTGLFEFVEGHPNA
HHHHHHHHCCCEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
AGFAIKRQNLILVNKVLNEKFKDINIEEDIQNVDFEIPAKRLRKEFILQLDGYKDYWGYK
CCEEEECCCEEEHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHEEECCCCCCCCEE
VEEPLIAITDLEIEVEQIEHLGKKNKTTVKFKHGDIEYIRFKSDENYFNQLTASNGTLVI
ECCCEEEEEECEEEHHHHHHCCCCCCEEEEEECCCEEEEEEECCCCHHHHHCCCCCEEEE
NVIGKAKANEYKGKKTPQIEIYELEVVRTKQKELVF
EECCCCCCCCCCCCCCCCEEEEEEEEEECCHHHCCC
>Mature Secondary Structure
MEYRLIGDNDYNFDPLATILKNRGIEDPKLFVNVDQSSVIHYSKLNNIDKAADCLIRHLN
CCEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEEHHHHCCHHHHHHHHHHHCC
NKNKLFVQVDSDVDGYTSSSIIINYIKKICPKANIHYRIQDGKEHGIFIDTIPDDVDLVI
CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEECCCCCCEEE
IPDAGSSQFEEHEALNKRGTEIIVIDHHECERVSEHAIVVNNQLSPNYSNKTLTGAGMAY
EECCCCCHHHHHHHHHHCCCEEEEEECHHHHHHCCCEEEEECCCCCCCCCCEEECCHHHH
KFCQAIDEKLNKNEAEQFLDLVSIGNIADSADSRNLETRYFMNEGLKKIKHPLLKKLFKK
HHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QEFSTKGDKSIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEKVPYKKRGQSETEL
HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCEE
VSIHEDTVRILGNLKAKQKRIVDAAGVEIKNRIEEKSLTANKVLIVYIEGILDKSLTGLV
EEEHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHH
ANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKDFKKELIDTGLFEFVEGHPNA
HHHHHHHHCCCEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
AGFAIKRQNLILVNKVLNEKFKDINIEEDIQNVDFEIPAKRLRKEFILQLDGYKDYWGYK
CCEEEECCCEEEHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHEEECCCCCCCCEE
VEEPLIAITDLEIEVEQIEHLGKKNKTTVKFKHGDIEYIRFKSDENYFNQLTASNGTLVI
ECCCEEEEEECEEEHHHHHHCCCCCCEEEEEECCCEEEEEEECCCCHHHHHCCCCCEEEE
NVIGKAKANEYKGKKTPQIEIYELEVVRTKQKELVF
EECCCCCCCCCCCCCCCCEEEEEEEEEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377