Click here to switch to the map view.

The map label for this gene is yosQ

Identifier: 16079062

GI number: 16079062

Start: 2160565

End: 2161086

Strand: Reverse

Name: yosQ

Synonym: BSU20050

Alternate gene names: 16079062

Gene position: 2161086-2160565 (Counterclockwise)

Preceding gene: 16079066

Following gene: 16079061

Centisome position: 51.26

GC content: 34.48

Gene sequence:

>522_bases
ATGATAAGGAAAGAAGTCGAAGAAGCACCTTGGTGGATAACGGAAACGGGAGTTATCATATCAAAAAAATTAAAGAAACC
AAGAAAGACATTTATTACTCCACATGGCTATGAAATGATAGGATACACGCATCCGAAAAAAGGAACACAGAACTATTTAG
TACATAGGTTAGTCGCAAAATATTTTATTTATGATATACCAAAAGGAATGTTTGTAAACCACATAGATGGAAATAAACTA
AACAACCACGTTCGGAACTTAGAAATAGTTACACCTAAAGAAAATACTCTACATGCAATGAAAATTGGATTAATGTCAGG
ACAACCTGGAGAAAGTAATTCAATGTCAAAGCTCACTAATATGGAGGCAACAAATTTAATCTATGATTTGATTGCTGGAA
TGAACAATGTTGAAGCTGGTGAAAAATACAGCCTTCATCCTCGTTACGTTAGTCTAATTCGACATAAAAGAAGATGGAAG
ACTTTATGGGATCGCATAGAACGTTCAACGACTATCGCATAG

Upstream 100 bases:

>100_bases
CCCTTTTGTCGGCAACGGCAAATGTGAACCTCTCTAATTGCTGGAAAATCCTTATTAGGACAATCAGCAGCGAAGCTATG
CGAACCCAAAGGAGGTGAAA

Downstream 100 bases:

>100_bases
GCGGCGAAATTCCGCAAAACGAGTAGGGCGCAAGCTATTGGCGTGGGTGAGAACCCCTTAAATCGAAACGGGAGGCATCC
TACAGGGATGATGATATAGT

Product: SPbeta phage endodeoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MIRKEVEEAPWWITETGVIISKKLKKPRKTFITPHGYEMIGYTHPKKGTQNYLVHRLVAKYFIYDIPKGMFVNHIDGNKL
NNHVRNLEIVTPKENTLHAMKIGLMSGQPGESNSMSKLTNMEATNLIYDLIAGMNNVEAGEKYSLHPRYVSLIRHKRRWK
TLWDRIERSTTIA

Sequences:

>Translated_173_residues
MIRKEVEEAPWWITETGVIISKKLKKPRKTFITPHGYEMIGYTHPKKGTQNYLVHRLVAKYFIYDIPKGMFVNHIDGNKL
NNHVRNLEIVTPKENTLHAMKIGLMSGQPGESNSMSKLTNMEATNLIYDLIAGMNNVEAGEKYSLHPRYVSLIRHKRRWK
TLWDRIERSTTIA
>Mature_173_residues
MIRKEVEEAPWWITETGVIISKKLKKPRKTFITPHGYEMIGYTHPKKGTQNYLVHRLVAKYFIYDIPKGMFVNHIDGNKL
NNHVRNLEIVTPKENTLHAMKIGLMSGQPGESNSMSKLTNMEATNLIYDLIAGMNNVEAGEKYSLHPRYVSLIRHKRRWK
TLWDRIERSTTIA

Specific function: A possible homing endonuclease, it is entirely encoded within the yosP intron

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOSQ_BACSU (O34479)

Other databases:

- EMBL:   AF012906
- EMBL:   AL009126
- RefSeq:   NP_389885.1
- HSSP:   P34081
- ProteinModelPortal:   O34479
- SMR:   O34479
- EnsemblBacteria:   EBBACT00000000965
- GeneID:   939514
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU20050
- NMPDR:   fig|224308.1.peg.2008
- GenoList:   BSU20050
- GeneTree:   EBGT00050000005981
- BioCyc:   BSUB:BSU20050-MONOMER
- InterPro:   IPR002711
- InterPro:   IPR003615
- SMART:   SM00507

Pfam domain/function: PF01844 HNH

EC number: NA

Molecular weight: Translated: 20120; Mature: 20120

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKEVEEAPWWITETGVIISKKLKKPRKTFITPHGYEMIGYTHPKKGTQNYLVHRLVAK
CCCCHHHHCCCEEECCCHHHHHHHCCCHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
YFIYDIPKGMFVNHIDGNKLNNHVRNLEIVTPKENTLHAMKIGLMSGQPGESNSMSKLTN
HHHHHCCCCCEEECCCCCHHHHHHCCCEEECCCCCCEEHHEEEECCCCCCCCCCHHHHHC
MEATNLIYDLIAGMNNVEAGEKYSLHPRYVSLIRHKRRWKTLWDRIERSTTIA
CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRKEVEEAPWWITETGVIISKKLKKPRKTFITPHGYEMIGYTHPKKGTQNYLVHRLVAK
CCCCHHHHCCCEEECCCHHHHHHHCCCHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
YFIYDIPKGMFVNHIDGNKLNNHVRNLEIVTPKENTLHAMKIGLMSGQPGESNSMSKLTN
HHHHHCCCCCEEECCCCCHHHHHHCCCEEECCCCCCEEHHEEEECCCCCCCCCCHHHHHC
MEATNLIYDLIAGMNNVEAGEKYSLHPRYVSLIRHKRRWKTLWDRIERSTTIA
CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679200; 9384377