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The map label for this gene is yodM

Identifier: 16079023

GI number: 16079023

Start: 2136913

End: 2137524

Strand: Reverse

Name: yodM

Synonym: BSU19650

Alternate gene names: 16079023

Gene position: 2137524-2136913 (Counterclockwise)

Preceding gene: 16079024

Following gene: 255767460

Centisome position: 50.71

GC content: 41.83

Gene sequence:

>612_bases
TTGTACAAGCCCGTTAGTTTGTTTCTTTTCTTTTTAATTCTAGCTGCGGCCATTCATACAAATGCTGTTCAATCTGCAGA
TGAAGCAATAAGCAAGGCAGCTGTTTTGATCCGTCAGCCATGGCTTAATGAAGTCATGACGGGGATCACGCATCTTGGTG
CTTCTTCTTTTCTGCTCCCTCTAATTGTCATCATTGGAGCAGGCATGTTTTTCTACAGAAAAACATGGGACGGCCTGTTG
ATGCTCTTAGTATTCGGCACAGATCGGCTGTTAAACAAAGTCTTAAAAGAATGGATCGAAAGAGTGAGGCCTGATTTTGC
ACCGCTGGTTCATGAATCATCCTTCAGTTTTCCGAGCGGCCATTCCATGAATGCTGCTTGTGTCTATCCTGTTATTGCTT
ACTTTTTAGTGAAACATCTCCCGTTTTTGTCTAAGCATAAAAAAATGGTATATATCATAGCCGGTGTAATTGCTGTTTTA
GTCGGCATAAGCAGAGTGTATCTGGGGGTTCATTTTGTGACAGACGTGTTAGGAGGCTTTAGCCTCGGCTTGCTTCTGTT
TTTCCTAGTAAAAGGTTTTGACGAAAAGATTAAGCGGTTTCGACAAAAATAG

Upstream 100 bases:

>100_bases
AAGAGCTGGATGAAGATGAGTGAGGCTTAAAACCGGAGCGGTCAGCTCCGGTTTTATTATTCATGTTCTATGACTTCTGT
GAAAATTGAGGTGGTTAAAA

Downstream 100 bases:

>100_bases
AGAGAGGAAAACACAGCAAAAACGCCAATATGTTAAAGAAATAAAAGGGAGGGGATCTTGATGATGTTATCCGTGTTTAA
AAAGAAGTCTTGTTCCTATG

Product: phospholipid phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MYKPVSLFLFFLILAAAIHTNAVQSADEAISKAAVLIRQPWLNEVMTGITHLGASSFLLPLIVIIGAGMFFYRKTWDGLL
MLLVFGTDRLLNKVLKEWIERVRPDFAPLVHESSFSFPSGHSMNAACVYPVIAYFLVKHLPFLSKHKKMVYIIAGVIAVL
VGISRVYLGVHFVTDVLGGFSLGLLLFFLVKGFDEKIKRFRQK

Sequences:

>Translated_203_residues
MYKPVSLFLFFLILAAAIHTNAVQSADEAISKAAVLIRQPWLNEVMTGITHLGASSFLLPLIVIIGAGMFFYRKTWDGLL
MLLVFGTDRLLNKVLKEWIERVRPDFAPLVHESSFSFPSGHSMNAACVYPVIAYFLVKHLPFLSKHKKMVYIIAGVIAVL
VGISRVYLGVHFVTDVLGGFSLGLLLFFLVKGFDEKIKRFRQK
>Mature_203_residues
MYKPVSLFLFFLILAAAIHTNAVQSADEAISKAAVLIRQPWLNEVMTGITHLGASSFLLPLIVIIGAGMFFYRKTWDGLL
MLLVFGTDRLLNKVLKEWIERVRPDFAPLVHESSFSFPSGHSMNAACVYPVIAYFLVKHLPFLSKHKKMVYIIAGVIAVL
VGISRVYLGVHFVTDVLGGFSLGLLLFFLVKGFDEKIKRFRQK

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PA-phosphatase related phosphoesterase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YODM_BACSU (O34349)

Other databases:

- EMBL:   AF015775
- EMBL:   AL009126
- PIR:   H69903
- RefSeq:   NP_389846.1
- ProteinModelPortal:   O34349
- EnsemblBacteria:   EBBACT00000002230
- GeneID:   940034
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19650
- NMPDR:   fig|224308.1.peg.1969
- GenoList:   BSU19650
- GeneTree:   EBGT00050000002453
- HOGENOM:   HBG700626
- OMA:   YLENHFL
- ProtClustDB:   CLSK887434
- BioCyc:   BSUB:BSU19650-MONOMER
- InterPro:   IPR016118
- InterPro:   IPR000326
- Gene3D:   G3DSA:1.20.144.10
- SMART:   SM00014

Pfam domain/function: PF01569 PAP2; SSF48317 AcPase_VanPerase

EC number: NA

Molecular weight: Translated: 22790; Mature: 22790

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xdbed628)-; HASH(0xf88aaa4)-; HASH(0xcbaed48)-; HASH(0xf64e940)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKPVSLFLFFLILAAAIHTNAVQSADEAISKAAVLIRQPWLNEVMTGITHLGASSFLLP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
LIVIIGAGMFFYRKTWDGLLMLLVFGTDRLLNKVLKEWIERVRPDFAPLVHESSFSFPSG
HHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC
HSMNAACVYPVIAYFLVKHLPFLSKHKKMVYIIAGVIAVLVGISRVYLGVHFVTDVLGGF
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLGLLLFFLVKGFDEKIKRFRQK
HHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MYKPVSLFLFFLILAAAIHTNAVQSADEAISKAAVLIRQPWLNEVMTGITHLGASSFLLP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
LIVIIGAGMFFYRKTWDGLLMLLVFGTDRLLNKVLKEWIERVRPDFAPLVHESSFSFPSG
HHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC
HSMNAACVYPVIAYFLVKHLPFLSKHKKMVYIIAGVIAVLVGISRVYLGVHFVTDVLGGF
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLGLLLFFLVKGFDEKIKRFRQK
HHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377