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The map label for this gene is yodC

Identifier: 16079013

GI number: 16079013

Start: 2127813

End: 2128421

Strand: Direct

Name: yodC

Synonym: BSU19550

Alternate gene names: 16079013

Gene position: 2127813-2128421 (Clockwise)

Preceding gene: 16079011

Following gene: 255767458

Centisome position: 50.47

GC content: 42.53

Gene sequence:

>609_bases
ATGACGAATACTCTGGATGTTTTAAAAGCACGTGCATCTGTAAAGGAATATGATACAAATGCCCCGATCTCTAAGGAGGA
GCTGACTGAGCTATTAGACCTTGCCACTAAAGCGCCTTCTGCTTGGAACCTTCAGCATTGGCATTTTACAGTATTCCACA
GCGATGAATCAAAAGCGGAGCTTCTTCCTGTAGCGTATAATCAAAAACAAATCGTTGAGTCTTCTGCTGTTGTTGCCATT
TTAGGCGATTTAAAGGCAAATGAAAACGGTGAAGAAGTTTATGCTGAATTAGCAAGCCAAGGCTATATTACGGATGAAAT
CAAACAAACATTGCTCGGCCAAATCAACGGTGCTTACCAAAGCGAGCAATTCGCACGTGATTCCGCTTTCTTAAATGCTT
CTTTAGCTGCTATGCAGCTTATGATTGCCGCAAAAGCAAAAGGTTATGACACTTGCGCAATCGGCGGATTTAACAAAGAG
CAGTTCCAAAAGCAATTTGATATCAGTGAGCGCTATGTTCCGGTTATGCTTATTTCAATCGGCAAAGCAGTGAAGCCTGC
GCATCAAAGCAACCGTCTGCCGCTTTCAAAAGTATCAACTTGGCTGTAA

Upstream 100 bases:

>100_bases
CATGTATTCAATGATCCATTACAATAATCTTTCAAGTTACATTTAGTAAGCTTCTAACTTTTCTATTATCATACCACGTT
TATCCGAAGGAGGAAACACT

Downstream 100 bases:

>100_bases
GGATATGAAAAACCTTAGTCCGAAATCCGGACTAAGGTTTTTTTATACAATCGCCTCTTTGTACCATTCACGAGCCTGTT
CAGCTTCATGCTGAGTCAGC

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MTNTLDVLKARASVKEYDTNAPISKEELTELLDLATKAPSAWNLQHWHFTVFHSDESKAELLPVAYNQKQIVESSAVVAI
LGDLKANENGEEVYAELASQGYITDEIKQTLLGQINGAYQSEQFARDSAFLNASLAAMQLMIAAKAKGYDTCAIGGFNKE
QFQKQFDISERYVPVMLISIGKAVKPAHQSNRLPLSKVSTWL

Sequences:

>Translated_202_residues
MTNTLDVLKARASVKEYDTNAPISKEELTELLDLATKAPSAWNLQHWHFTVFHSDESKAELLPVAYNQKQIVESSAVVAI
LGDLKANENGEEVYAELASQGYITDEIKQTLLGQINGAYQSEQFARDSAFLNASLAAMQLMIAAKAKGYDTCAIGGFNKE
QFQKQFDISERYVPVMLISIGKAVKPAHQSNRLPLSKVSTWL
>Mature_201_residues
TNTLDVLKARASVKEYDTNAPISKEELTELLDLATKAPSAWNLQHWHFTVFHSDESKAELLPVAYNQKQIVESSAVVAIL
GDLKANENGEEVYAELASQGYITDEIKQTLLGQINGAYQSEQFARDSAFLNASLAAMQLMIAAKAKGYDTCAIGGFNKEQ
FQKQFDISERYVPVMLISIGKAVKPAHQSNRLPLSKVSTWL

Specific function: Putative nitroreductase that may contribute to the degradation of aromatic compounds (Potential)

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YODC_BACSU (P81102)

Other databases:

- EMBL:   AF006665
- EMBL:   AF015775
- EMBL:   AL009126
- PIR:   H69902
- RefSeq:   NP_389836.1
- ProteinModelPortal:   P81102
- SMR:   P81102
- EnsemblBacteria:   EBBACT00000003372
- GeneID:   939506
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19550
- NMPDR:   fig|224308.1.peg.1959
- GenoList:   BSU19550
- GeneTree:   EBGT00070000031913
- HOGENOM:   HBG751302
- OMA:   FDISERY
- ProtClustDB:   CLSK2460925
- BioCyc:   BSUB:BSU19550-MONOMER
- GO:   GO:0005737
- InterPro:   IPR000415

Pfam domain/function: PF00881 Nitroreductase; SSF55469 Nitroreductase

EC number: 1.-.-.- [C]

Molecular weight: Translated: 22341; Mature: 22209

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: BINDING 192-192

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNTLDVLKARASVKEYDTNAPISKEELTELLDLATKAPSAWNLQHWHFTVFHSDESKAE
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCE
LLPVAYNQKQIVESSAVVAILGDLKANENGEEVYAELASQGYITDEIKQTLLGQINGAYQ
EEEEECCHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHH
SEQFARDSAFLNASLAAMQLMIAAKAKGYDTCAIGGFNKEQFQKQFDISERYVPVMLISI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHEEHH
GKAVKPAHQSNRLPLSKVSTWL
CCHHCCCHHCCCCCHHHHHHCC
>Mature Secondary Structure 
TNTLDVLKARASVKEYDTNAPISKEELTELLDLATKAPSAWNLQHWHFTVFHSDESKAE
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCE
LLPVAYNQKQIVESSAVVAILGDLKANENGEEVYAELASQGYITDEIKQTLLGQINGAYQ
EEEEECCHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHH
SEQFARDSAFLNASLAAMQLMIAAKAKGYDTCAIGGFNKEQFQKQFDISERYVPVMLISI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHEEHH
GKAVKPAHQSNRLPLSKVSTWL
CCHHCCCHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377