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The map label for this gene is yocR

Identifier: 16078994

GI number: 16078994

Start: 2104934

End: 2106271

Strand: Reverse

Name: yocR

Synonym: BSU19340

Alternate gene names: 16078994

Gene position: 2106271-2104934 (Counterclockwise)

Preceding gene: 255767452

Following gene: 16078990

Centisome position: 49.96

GC content: 40.13

Gene sequence:

>1338_bases
GTGAAGGAAGCAAATCAATGGTCTTCGAAGCTCGGCTTTATTTTAGCCGCGGCAGGATCAGCTATCGGGCTTGGTGCGAT
ATGGAAATTCCCATATGTTGCCGGAACCAGCGGAGGAGGCGCATTTTTACTTATTTTTATTTTATTTACGGTTTTAATCG
GACTGCCTTTATTGTTAGGTGAATTCATCATAGGCAGAAGAACACAGAAAGATGCCGTTCAGTCCTATAAAACACTTGCT
CCAGGAACGAAGTGGCATTGGATCGGTTATTTAGGCATGGTGACGTGCTTTATTCTTCTATCTTTCTACAGTGTCGTAGG
CGGATGGATTTTAATTTATATTATAAAAGGCTTCACTGGCGGTTTATCGCAAACATCTGGTTTTGATACGATATTTGCAA
GTACCATTTCAAATCCTTATTTGGCTGTAGGAGGCCAGCTGCTCTTTATGGTGGTAACAATTTTAGTTGTTGCAAAAGGG
GTAAGCAGCGGAATTGAAAAAGCAAGCCAAGTATTAATGCCGGCGCTTTTTCTATTATTCATCATTTTAATGGTGCGTTC
GGTTACACTTGATGGCGCGATGGAAGGAATCAAATTTTTCCTCATGCCTGATTTAACTGCAATTGATGCCAATACCATTT
TATATGCAATGGGACAATCCTTTTTCTTATTAAGTGTCGGTGTATCTGTCATGGTAACGTATAGCGCTTATTTAGAGAAA
CAGGAAAATCTGGTACAGTCCGCTGTATCTGTAACTGTTATGAACATGCTTGTTGCTGTAATGGCCGGAATTGCGATTTT
TCCAGCTGTATTTTCATTCGGCCTCAAGCCAGACCAAGGCCCGGTTCTGTTATTTAACGTTCTGCCGACTGTGTTTAATC
AAATGCCGTTCGGAATTATCTTTTTATTAGCATTTTTACTTCTATTTTTATTTGCTGCATTGACATCTGCTTTTTCAATG
CTGGAAATTTTGGTCGCAGTACTGTCGAAAGGCGATATCAATAAGAGAAAACGATTCGCTTGGTTAGGCGGTATTGCTAT
TTTTATTGTCGGTGTGCCGTCTGCATTATCATACGGTGTCTTAAGTGACGTCACTATATTTCATCTGTCTATTTTTGATG
CGGCTGACTATCTTGTGAGCAATATTTTAATGCCGTTAGGTGCGTTACTGATTTCGATTTTTGTTCCGCTAAAAATACCG
AAACAGGATTTGTTTGACGAGCTGAAAAGCGGTTCCAATCTCAAACGAAAGTGGTTTGCGGTTTGGCTGCTGCTCATTCG
ATATCTATCTCCTGTTGCCATCATCATCGTGTTTTTGCATGTGATAGGTATTTTTTAA

Upstream 100 bases:

>100_bases
ATAGATATATGATGTAAACTAATTAAAATGTTCTTGACTATATAGGAAGATATTCTTACAATGAACCTTTATAATGGTTA
GATCAAATAGGAGTGATACG

Downstream 100 bases:

>100_bases
CACACGAAGCCCCCGAGGAAAGGGGGCTTTTTTTAATAGAGCTTCCAAACGACTTCTTTTGCCTGCTCAAAACGTTTTTC
AGCCTCGCGCCAATCCACGA

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MKEANQWSSKLGFILAAAGSAIGLGAIWKFPYVAGTSGGGAFLLIFILFTVLIGLPLLLGEFIIGRRTQKDAVQSYKTLA
PGTKWHWIGYLGMVTCFILLSFYSVVGGWILIYIIKGFTGGLSQTSGFDTIFASTISNPYLAVGGQLLFMVVTILVVAKG
VSSGIEKASQVLMPALFLLFIILMVRSVTLDGAMEGIKFFLMPDLTAIDANTILYAMGQSFFLLSVGVSVMVTYSAYLEK
QENLVQSAVSVTVMNMLVAVMAGIAIFPAVFSFGLKPDQGPVLLFNVLPTVFNQMPFGIIFLLAFLLLFLFAALTSAFSM
LEILVAVLSKGDINKRKRFAWLGGIAIFIVGVPSALSYGVLSDVTIFHLSIFDAADYLVSNILMPLGALLISIFVPLKIP
KQDLFDELKSGSNLKRKWFAVWLLLIRYLSPVAIIIVFLHVIGIF

Sequences:

>Translated_445_residues
MKEANQWSSKLGFILAAAGSAIGLGAIWKFPYVAGTSGGGAFLLIFILFTVLIGLPLLLGEFIIGRRTQKDAVQSYKTLA
PGTKWHWIGYLGMVTCFILLSFYSVVGGWILIYIIKGFTGGLSQTSGFDTIFASTISNPYLAVGGQLLFMVVTILVVAKG
VSSGIEKASQVLMPALFLLFIILMVRSVTLDGAMEGIKFFLMPDLTAIDANTILYAMGQSFFLLSVGVSVMVTYSAYLEK
QENLVQSAVSVTVMNMLVAVMAGIAIFPAVFSFGLKPDQGPVLLFNVLPTVFNQMPFGIIFLLAFLLLFLFAALTSAFSM
LEILVAVLSKGDINKRKRFAWLGGIAIFIVGVPSALSYGVLSDVTIFHLSIFDAADYLVSNILMPLGALLISIFVPLKIP
KQDLFDELKSGSNLKRKWFAVWLLLIRYLSPVAIIIVFLHVIGIF
>Mature_445_residues
MKEANQWSSKLGFILAAAGSAIGLGAIWKFPYVAGTSGGGAFLLIFILFTVLIGLPLLLGEFIIGRRTQKDAVQSYKTLA
PGTKWHWIGYLGMVTCFILLSFYSVVGGWILIYIIKGFTGGLSQTSGFDTIFASTISNPYLAVGGQLLFMVVTILVVAKG
VSSGIEKASQVLMPALFLLFIILMVRSVTLDGAMEGIKFFLMPDLTAIDANTILYAMGQSFFLLSVGVSVMVTYSAYLEK
QENLVQSAVSVTVMNMLVAVMAGIAIFPAVFSFGLKPDQGPVLLFNVLPTVFNQMPFGIIFLLAFLLLFLFAALTSAFSM
LEILVAVLSKGDINKRKRFAWLGGIAIFIVGVPSALSYGVLSDVTIFHLSIFDAADYLVSNILMPLGALLISIFVPLKIP
KQDLFDELKSGSNLKRKWFAVWLLLIRYLSPVAIIIVFLHVIGIF

Specific function: Putative sodium-dependent transporter

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family

Homologues:

Organism=Homo sapiens, GI21361581, Length=378, Percent_Identity=26.1904761904762, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI4507043, Length=390, Percent_Identity=26.1538461538462, Blast_Score=127, Evalue=3e-29,
Organism=Homo sapiens, GI7657587, Length=378, Percent_Identity=25.6613756613757, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI171184408, Length=380, Percent_Identity=25, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI171184406, Length=380, Percent_Identity=25, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI171184404, Length=380, Percent_Identity=25, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI51468073, Length=294, Percent_Identity=26.8707482993197, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI58219014, Length=303, Percent_Identity=28.0528052805281, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI188528618, Length=424, Percent_Identity=25, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI33354281, Length=305, Percent_Identity=26.5573770491803, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI194018524, Length=317, Percent_Identity=28.391167192429, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI4507041, Length=393, Percent_Identity=23.9185750636132, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI11181770, Length=298, Percent_Identity=25.1677852348993, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI197276623, Length=352, Percent_Identity=25, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI54607094, Length=352, Percent_Identity=25, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI92859670, Length=435, Percent_Identity=25.7471264367816, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI289191351, Length=394, Percent_Identity=23.6040609137056, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI4557046, Length=394, Percent_Identity=23.6040609137056, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI289191377, Length=394, Percent_Identity=23.6040609137056, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI12408638, Length=276, Percent_Identity=26.4492753623188, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI21361693, Length=121, Percent_Identity=35.5371900826446, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI55749589, Length=284, Percent_Identity=25.7042253521127, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI197276625, Length=123, Percent_Identity=34.9593495934959, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI5032097, Length=349, Percent_Identity=22.9226361031519, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI300360519, Length=194, Percent_Identity=27.8350515463918, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI134304856, Length=194, Percent_Identity=30.9278350515464, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI218563756, Length=115, Percent_Identity=31.304347826087, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17555248, Length=425, Percent_Identity=25.4117647058824, Blast_Score=127, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI25146584, Length=433, Percent_Identity=25.1732101616628, Blast_Score=111, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI71995588, Length=411, Percent_Identity=23.1143552311436, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI133952791, Length=467, Percent_Identity=24.8394004282655, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17554804, Length=471, Percent_Identity=21.8683651804671, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71998244, Length=290, Percent_Identity=26.8965517241379, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI115534083, Length=431, Percent_Identity=21.5777262180974, Blast_Score=65, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17542050, Length=122, Percent_Identity=29.5081967213115, Blast_Score=65, Evalue=1e-10,
Organism=Drosophila melanogaster, GI17136952, Length=401, Percent_Identity=26.4339152119701, Blast_Score=145, Evalue=5e-35,
Organism=Drosophila melanogaster, GI281364394, Length=403, Percent_Identity=26.5508684863524, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI28574704, Length=403, Percent_Identity=26.5508684863524, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI17136950, Length=403, Percent_Identity=26.5508684863524, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI28574702, Length=403, Percent_Identity=26.5508684863524, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24762620, Length=411, Percent_Identity=27.007299270073, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24639514, Length=514, Percent_Identity=25.0972762645914, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI221329674, Length=514, Percent_Identity=25.0972762645914, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI45550877, Length=458, Percent_Identity=27.0742358078603, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI45551183, Length=461, Percent_Identity=26.4642082429501, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24655079, Length=298, Percent_Identity=27.8523489932886, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24639516, Length=300, Percent_Identity=27.6666666666667, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI281364136, Length=524, Percent_Identity=24.8091603053435, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI45551088, Length=305, Percent_Identity=24.2622950819672, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24652942, Length=305, Percent_Identity=24.2622950819672, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24661428, Length=386, Percent_Identity=25.1295336787565, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24582567, Length=306, Percent_Identity=26.4705882352941, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI19921936, Length=404, Percent_Identity=23.5148514851485, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI281365034, Length=316, Percent_Identity=24.3670886075949, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281363702, Length=300, Percent_Identity=23.6666666666667, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24639853, Length=325, Percent_Identity=25.5384615384615, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19921352, Length=322, Percent_Identity=24.8447204968944, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24584353, Length=322, Percent_Identity=24.8447204968944, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24654186, Length=139, Percent_Identity=32.3741007194245, Blast_Score=77, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOCR_BACSU (O34383)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   D69902
- RefSeq:   NP_389816.1
- HSSP:   O67854
- ProteinModelPortal:   O34383
- SMR:   O34383
- EnsemblBacteria:   EBBACT00000004039
- GeneID:   939450
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19340
- NMPDR:   fig|224308.1.peg.1939
- GenoList:   BSU19340
- GeneTree:   EBGT00070000032073
- HOGENOM:   HBG702834
- OMA:   AFGMEPS
- ProtClustDB:   CLSK872643
- BioCyc:   BSUB:BSU19340-MONOMER
- InterPro:   IPR000175
- PANTHER:   PTHR11616
- PRINTS:   PR00176

Pfam domain/function: PF00209 SNF

EC number: NA

Molecular weight: Translated: 48335; Mature: 48335

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1; PS00754 NA_NEUROTRAN_SYMP_2; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xcf25044)-; HASH(0xfcf9fcc)-; HASH(0xf87a6f0)-; HASH(0xfde3188)-; HASH(0xb59a1d0)-; HASH(0xee2171c)-; HASH(0xf7aa9e4)-; HASH(0xff12f9c)-; HASH(0xf134408)-; HASH(0xf4dccc0)-; HASH(0xf9202cc)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEANQWSSKLGFILAAAGSAIGLGAIWKFPYVAGTSGGGAFLLIFILFTVLIGLPLLLG
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH
EFIIGRRTQKDAVQSYKTLAPGTKWHWIGYLGMVTCFILLSFYSVVGGWILIYIIKGFTG
HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GLSQTSGFDTIFASTISNPYLAVGGQLLFMVVTILVVAKGVSSGIEKASQVLMPALFLLF
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IILMVRSVTLDGAMEGIKFFLMPDLTAIDANTILYAMGQSFFLLSVGVSVMVTYSAYLEK
HHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
QENLVQSAVSVTVMNMLVAVMAGIAIFPAVFSFGLKPDQGPVLLFNVLPTVFNQMPFGII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCCCHHHH
FLLAFLLLFLFAALTSAFSMLEILVAVLSKGDINKRKRFAWLGGIAIFIVGVPSALSYGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECHHHHHHHH
LSDVTIFHLSIFDAADYLVSNILMPLGALLISIFVPLKIPKQDLFDELKSGSNLKRKWFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHH
VWLLLIRYLSPVAIIIVFLHVIGIF
HHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377