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The map label for this gene is yobS

Identifier: 16078967

GI number: 16078967

Start: 2081172

End: 2081747

Strand: Reverse

Name: yobS

Synonym: BSU19070

Alternate gene names: 16078967

Gene position: 2081747-2081172 (Counterclockwise)

Preceding gene: 16078968

Following gene: 16078966

Centisome position: 49.38

GC content: 42.36

Gene sequence:

>576_bases
ATGTCACCGAGAATAGGTTTGACCCAAAAAATGATTGTAGACGCTGCAGCAGAGATTGCCGATCAGGAAGGGGTAAATGG
TGTCTCACTTGCTGCACTTTCTAAAAAAATGAATGTTCGCCCCCCGTCATTGTATAACCATATCAACGGGCTGCAAGCGA
TCAGAGCAGAACTTGCTGTCAGAGGACTGACAAAGCTTTTTGATCAAATGGCGGACTCCGTAACCGAACGAAAGGGAGAT
TCCGCGATGCTTTCTTTAGCTCATGCATATGTTGATTTTGCAATTGAAAATCCCGGATATTATGAAGCGGCTCTTCTTAA
GGTTCACGACAAACGGACGGAAATCGTCTCTGACCAAATTGTCTGTCTTGTGACGAAGCTGCTCATTGAAAACGGCTATG
CAAGTGAAAAGACTGCCATTCATGCGACAAGGGGGCTCAGAAGTCTGCTGCATGGCTTTACTGTTTTAATCGCAAAAGAA
GCATTTGAACGTGAGGAGGACATTTTAGAAAGCCTGTCATTTTCAATTCGGACATTTTTGTCAGGATTATTAATAAACAA
TAAAAATATTATGTAA

Upstream 100 bases:

>100_bases
AGGCGCCTTCCTGTCTCGCTGTCGGACATGGAAAATTCCTGCGATCACCTTCAGAGCGGATGAGACAGGCGATCCAAAAA
GCAAAGAAAGGATGATGAGC

Downstream 100 bases:

>100_bases
ACAAATAAATGGATGTCTTATATTTCTGAATATTGTATAATATCAAGGGAGTATACATAGGGGAGAGGCATTATGCAATG
GATGACATTCGCAAGATTGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSPRIGLTQKMIVDAAAEIADQEGVNGVSLAALSKKMNVRPPSLYNHINGLQAIRAELAVRGLTKLFDQMADSVTERKGD
SAMLSLAHAYVDFAIENPGYYEAALLKVHDKRTEIVSDQIVCLVTKLLIENGYASEKTAIHATRGLRSLLHGFTVLIAKE
AFEREEDILESLSFSIRTFLSGLLINNKNIM

Sequences:

>Translated_191_residues
MSPRIGLTQKMIVDAAAEIADQEGVNGVSLAALSKKMNVRPPSLYNHINGLQAIRAELAVRGLTKLFDQMADSVTERKGD
SAMLSLAHAYVDFAIENPGYYEAALLKVHDKRTEIVSDQIVCLVTKLLIENGYASEKTAIHATRGLRSLLHGFTVLIAKE
AFEREEDILESLSFSIRTFLSGLLINNKNIM
>Mature_190_residues
SPRIGLTQKMIVDAAAEIADQEGVNGVSLAALSKKMNVRPPSLYNHINGLQAIRAELAVRGLTKLFDQMADSVTERKGDS
AMLSLAHAYVDFAIENPGYYEAALLKVHDKRTEIVSDQIVCLVTKLLIENGYASEKTAIHATRGLRSLLHGFTVLIAKEA
FEREEDILESLSFSIRTFLSGLLINNKNIM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOBS_BACSU (O34892)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   A69900
- RefSeq:   NP_389788.1
- HSSP:   Q815X4
- ProteinModelPortal:   O34892
- SMR:   O34892
- EnsemblBacteria:   EBBACT00000000401
- GeneID:   939639
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19070
- NMPDR:   fig|224308.1.peg.1911
- GenoList:   BSU19070
- GeneTree:   EBGT00050000002828
- HOGENOM:   HBG417664
- OMA:   MPRAGLD
- ProtClustDB:   CLSK2752420
- BioCyc:   BSUB:BSU19070-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 21017; Mature: 20885

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRIGLTQKMIVDAAAEIADQEGVNGVSLAALSKKMNVRPPSLYNHINGLQAIRAELAV
CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RGLTKLFDQMADSVTERKGDSAMLSLAHAYVDFAIENPGYYEAALLKVHDKRTEIVSDQI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
VCLVTKLLIENGYASEKTAIHATRGLRSLLHGFTVLIAKEAFEREEDILESLSFSIRTFL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLLINNKNIM
HHHHHCCCCCC
>Mature Secondary Structure 
SPRIGLTQKMIVDAAAEIADQEGVNGVSLAALSKKMNVRPPSLYNHINGLQAIRAELAV
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RGLTKLFDQMADSVTERKGDSAMLSLAHAYVDFAIENPGYYEAALLKVHDKRTEIVSDQI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
VCLVTKLLIENGYASEKTAIHATRGLRSLLHGFTVLIAKEAFEREEDILESLSFSIRTFL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLLINNKNIM
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377