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The map label for this gene is yobO

Identifier: 16078963

GI number: 16078963

Start: 2076206

End: 2078626

Strand: Direct

Name: yobO

Synonym: BSU19030

Alternate gene names: 16078963

Gene position: 2076206-2078626 (Clockwise)

Preceding gene: 16078962

Following gene: 16078971

Centisome position: 49.25

GC content: 41.97

Gene sequence:

>2421_bases
ATGGTTCATTTTAAAAACTGCCCTGATCCTTCTCTAAACGCCAATTCTCAGTCTCACCCCGAATTTTCATCCGAATTAGA
ACATATTAAGACAAGAATGCAAAACTTTATTAAGCACTCGGTTACAGACCAAAATATCGAAGTTACTGACGCAAGGGTGA
CGGCCGAAGGAGAGGTCACCTCTCTTTTAAAAGAACGTCTCGACAAGGAATATTATAGGCTTTTATCTAAAATCACCCGG
GAAGTAAATGTGGCTGACTTCGGCGCTGTTCCAGATGGAAGAGACAATACTGAAGCTTTTCGAAAAGCAATCGGGAATGG
CCGAGTCAAAGTACATGTTCCAGCGGGAGAATACCTCGTTCAAGGGATTAAACTTCCATCTTGGACAACAATTGTTGGAC
AAGGTAAAGGGATCACAGTGATTAAATTGCATGAAGACACTCCAGCGCATGAATGGGTGATTACAAATGATGATTATCAA
AATGGAAATCGCAATATTTTTGTCCAAGGAATGTCATTAGACTGGAATCCAAGTAGACAATGCGGTGTGAGAAATCCAGG
GGGACAGTTCTCCAGTTGTTTAACTTTTGCTAAGGTTGAATATGGGTGGATCAAAGATGTGGAAGCGATTAACGCAGGTC
TTCATGGTATTGATATTACATCGCCAACGTATGACCATTTGCCTGATACCGATTGGACAAAAGACGGATCAAGATATATT
TGGATCGATAACTGTGTGACATATGGTTCAGGAGACGACGGCATTACCACCCATTATAGCGAATACATCTTTATTTCAAA
CTGCCATTCAGGAAATCCGCGGGGAACAGAATTTGCTGAAGGTGTTTCAAACTCCAACGGAATAGAAATTGACGACGGCT
CTAGGCATGTGTGGCTTTTGAATAACTTTACAAGCGGCAACATCCGCGGAGTTGAAGTAAAAGCCCATGAACTGTGGCCA
GCCTCTCAAAACGTCCATATCATAGGCCATATTTCTTATCGCGATGTTCGTGCATTTGATCTTCGTCATATTGGTCACCA
TCAAATTACAGATCCTGAAAGCACAACAGCATACGATGTCACACTCATTGATTGTTCAGCAGTTGAACCAGTTTTCAACT
CGCTTTACGATGCTGTGACCCCAAGAGCGCTGGTTATTTCGGCATATAAAAACGTTAATGTAAGCGGATTCACAGCGATT
GGTGATCCAGACTATGATTATAAAGAAAACCCTGTCGTAGCCTTGCAATATCGCAGCCAAAATATAACCATTAATGGTAT
TAAAATTCGCGGTTTTAAAAAAGCCGGTGTTGATATTAATTTATCAGGCGGATCAAATAAAACTGATTATATTAAAATTT
CAAATTTTGATATTTATAAATCTGCTCCAAAAGGAATTTCAATCGGTGGAGGCCTCTACAATGTCAATATTCTAAATGGA
ACGATGATTACTGACAATGGGACAGTTGCAATTCAGTCCCCCAATAATCAGGCCACAATTCTCGGTGTACAATCAGAAGG
TTATAGTGTGGCAGCCTCAATCAAAGGCCAAACATACCAACAAGTTCCAATCAATTTGAAAGGAGGCATACAGCTTGCAA
CGACCTCTGGCTTTGCCGTTAACCAAACAAGCGCAGTTATAGCAGGTACCGGCGACATTACGGCCCGCGGAGAAAGAAAT
GCGGTCATTAGCTCTTCTGGAGGCTCCAGTACTGAAGGCTCTCGCGCATTAATCGCTTCTTCAAATAACGCACATATTAG
AGGAAACCAAGCGTCAAGAACAATACTGTCTTCTGAAAATATTATACTTGAGGAACCATACACCGTGGCAGGAGGTCATC
AATCAATAAAGTGGCTTCTTGACTCTGTTCGGGGAAACGGGACGTTTGCCGGTGCAATCAGTTCTTCTTTAGGTGGATAT
GGAGAGTATTTTGAGAGTTCAACTGGACAGTTAATCCATACTGGTACAATCGTGACTTTAAGAGGTGAAAAAATTGTGCC
CGCGAATGTTGGAGATTATATGCTTGGCGTTATTTCAGAAACTTCAGCTTTCATTTCAGGAGCCTCCAGTTTCGTCTGGC
AGGGCCGTTATTTGACAAATGAGTTCGGCGGATTTATTTATGAAACGGTGACTGATGAGGAAAGCGGTGAACTCATACGT
GTTCCCAAACAAAATCCAGACTACGATACAGCGCTGGAGGCAAATTATCATTCACGGGCAGCAAGAGACGAATGGCACGT
TGTAGGGTTGGTTGGCCAACATTATGTGCGTATTGACGAAACTGTCAATCAAGGAGATTATCTTACGGCACATAATGGAA
TAGGAACAAAAGCCACTGAAGGAAGCTGGAAAGTAATGAAAATAACCTCTGCTTACACATCAGAAAAAGGGTATGGTATC
GCTCTAACCGTCATCAAATAG

Upstream 100 bases:

>100_bases
AACAAATACAGAATTGGAAAGAGAAGCGCCAAAAGAAATGCTAACTCCTTATCTCAAAGACAAAACTGCGCTTATATTAA
AAGAAAGAGGTGTCTTTAGA

Downstream 100 bases:

>100_bases
TGGATACGCCGACCAGTTCAATATATGTTTATCCAAATAATTAGATCTCTTTTCTAGGTTCTTTATTCCTTGTATGTTAT
TATCAATTTTCAATATCTAC

Product: phage-related pre-neck appendage protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 806; Mature: 806

Protein sequence:

>806_residues
MVHFKNCPDPSLNANSQSHPEFSSELEHIKTRMQNFIKHSVTDQNIEVTDARVTAEGEVTSLLKERLDKEYYRLLSKITR
EVNVADFGAVPDGRDNTEAFRKAIGNGRVKVHVPAGEYLVQGIKLPSWTTIVGQGKGITVIKLHEDTPAHEWVITNDDYQ
NGNRNIFVQGMSLDWNPSRQCGVRNPGGQFSSCLTFAKVEYGWIKDVEAINAGLHGIDITSPTYDHLPDTDWTKDGSRYI
WIDNCVTYGSGDDGITTHYSEYIFISNCHSGNPRGTEFAEGVSNSNGIEIDDGSRHVWLLNNFTSGNIRGVEVKAHELWP
ASQNVHIIGHISYRDVRAFDLRHIGHHQITDPESTTAYDVTLIDCSAVEPVFNSLYDAVTPRALVISAYKNVNVSGFTAI
GDPDYDYKENPVVALQYRSQNITINGIKIRGFKKAGVDINLSGGSNKTDYIKISNFDIYKSAPKGISIGGGLYNVNILNG
TMITDNGTVAIQSPNNQATILGVQSEGYSVAASIKGQTYQQVPINLKGGIQLATTSGFAVNQTSAVIAGTGDITARGERN
AVISSSGGSSTEGSRALIASSNNAHIRGNQASRTILSSENIILEEPYTVAGGHQSIKWLLDSVRGNGTFAGAISSSLGGY
GEYFESSTGQLIHTGTIVTLRGEKIVPANVGDYMLGVISETSAFISGASSFVWQGRYLTNEFGGFIYETVTDEESGELIR
VPKQNPDYDTALEANYHSRAARDEWHVVGLVGQHYVRIDETVNQGDYLTAHNGIGTKATEGSWKVMKITSAYTSEKGYGI
ALTVIK

Sequences:

>Translated_806_residues
MVHFKNCPDPSLNANSQSHPEFSSELEHIKTRMQNFIKHSVTDQNIEVTDARVTAEGEVTSLLKERLDKEYYRLLSKITR
EVNVADFGAVPDGRDNTEAFRKAIGNGRVKVHVPAGEYLVQGIKLPSWTTIVGQGKGITVIKLHEDTPAHEWVITNDDYQ
NGNRNIFVQGMSLDWNPSRQCGVRNPGGQFSSCLTFAKVEYGWIKDVEAINAGLHGIDITSPTYDHLPDTDWTKDGSRYI
WIDNCVTYGSGDDGITTHYSEYIFISNCHSGNPRGTEFAEGVSNSNGIEIDDGSRHVWLLNNFTSGNIRGVEVKAHELWP
ASQNVHIIGHISYRDVRAFDLRHIGHHQITDPESTTAYDVTLIDCSAVEPVFNSLYDAVTPRALVISAYKNVNVSGFTAI
GDPDYDYKENPVVALQYRSQNITINGIKIRGFKKAGVDINLSGGSNKTDYIKISNFDIYKSAPKGISIGGGLYNVNILNG
TMITDNGTVAIQSPNNQATILGVQSEGYSVAASIKGQTYQQVPINLKGGIQLATTSGFAVNQTSAVIAGTGDITARGERN
AVISSSGGSSTEGSRALIASSNNAHIRGNQASRTILSSENIILEEPYTVAGGHQSIKWLLDSVRGNGTFAGAISSSLGGY
GEYFESSTGQLIHTGTIVTLRGEKIVPANVGDYMLGVISETSAFISGASSFVWQGRYLTNEFGGFIYETVTDEESGELIR
VPKQNPDYDTALEANYHSRAARDEWHVVGLVGQHYVRIDETVNQGDYLTAHNGIGTKATEGSWKVMKITSAYTSEKGYGI
ALTVIK
>Mature_806_residues
MVHFKNCPDPSLNANSQSHPEFSSELEHIKTRMQNFIKHSVTDQNIEVTDARVTAEGEVTSLLKERLDKEYYRLLSKITR
EVNVADFGAVPDGRDNTEAFRKAIGNGRVKVHVPAGEYLVQGIKLPSWTTIVGQGKGITVIKLHEDTPAHEWVITNDDYQ
NGNRNIFVQGMSLDWNPSRQCGVRNPGGQFSSCLTFAKVEYGWIKDVEAINAGLHGIDITSPTYDHLPDTDWTKDGSRYI
WIDNCVTYGSGDDGITTHYSEYIFISNCHSGNPRGTEFAEGVSNSNGIEIDDGSRHVWLLNNFTSGNIRGVEVKAHELWP
ASQNVHIIGHISYRDVRAFDLRHIGHHQITDPESTTAYDVTLIDCSAVEPVFNSLYDAVTPRALVISAYKNVNVSGFTAI
GDPDYDYKENPVVALQYRSQNITINGIKIRGFKKAGVDINLSGGSNKTDYIKISNFDIYKSAPKGISIGGGLYNVNILNG
TMITDNGTVAIQSPNNQATILGVQSEGYSVAASIKGQTYQQVPINLKGGIQLATTSGFAVNQTSAVIAGTGDITARGERN
AVISSSGGSSTEGSRALIASSNNAHIRGNQASRTILSSENIILEEPYTVAGGHQSIKWLLDSVRGNGTFAGAISSSLGGY
GEYFESSTGQLIHTGTIVTLRGEKIVPANVGDYMLGVISETSAFISGASSFVWQGRYLTNEFGGFIYETVTDEESGELIR
VPKQNPDYDTALEANYHSRAARDEWHVVGLVGQHYVRIDETVNQGDYLTAHNGIGTKATEGSWKVMKITSAYTSEKGYGI
ALTVIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 PbH1 repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOBO_BACSU (O34433)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   F69899
- RefSeq:   NP_389784.1
- ProteinModelPortal:   O34433
- SMR:   O34433
- EnsemblBacteria:   EBBACT00000001819
- GeneID:   939627
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19030
- NMPDR:   fig|224308.1.peg.1907
- GenoList:   BSU19030
- GeneTree:   EBGT00050000001501
- HOGENOM:   HBG338034
- OMA:   LTNEFGG
- ProtClustDB:   CLSK887402
- BioCyc:   BSUB:BSU19030-MONOMER
- InterPro:   IPR021865
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050
- Gene3D:   G3DSA:2.160.20.10
- SMART:   SM00710

Pfam domain/function: PF11962 DUF3476; SSF51126 Pectin_lyas_like

EC number: NA

Molecular weight: Translated: 87740; Mature: 87740

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHFKNCPDPSLNANSQSHPEFSSELEHIKTRMQNFIKHSVTDQNIEVTDARVTAEGEVT
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCHHH
SLLKERLDKEYYRLLSKITREVNVADFGAVPDGRDNTEAFRKAIGNGRVKVHVPAGEYLV
HHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHH
QGIKLPSWTTIVGQGKGITVIKLHEDTPAHEWVITNDDYQNGNRNIFVQGMSLDWNPSRQ
HCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCC
CGVRNPGGQFSSCLTFAKVEYGWIKDVEAINAGLHGIDITSPTYDHLPDTDWTKDGSRYI
CCCCCCCCCHHHHEEEEEECCCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEE
WIDNCVTYGSGDDGITTHYSEYIFISNCHSGNPRGTEFAEGVSNSNGIEIDDGSRHVWLL
EEECEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHCCCCCCCEEECCCCEEEEEE
NNFTSGNIRGVEVKAHELWPASQNVHIIGHISYRDVRAFDLRHIGHHQITDPESTTAYDV
ECCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCEEEEHHHHCCCCCCCCCCCCEEEEE
TLIDCSAVEPVFNSLYDAVTPRALVISAYKNVNVSGFTAIGDPDYDYKENPVVALQYRSQ
EEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEEECC
NITINGIKIRGFKKAGVDINLSGGSNKTDYIKISNFDIYKSAPKGISIGGGLYNVNILNG
EEEEEEEEEEEEEECCCEEEECCCCCCCCEEEEECEEEECCCCCCEEECCCEEEEEEEEC
TMITDNGTVAIQSPNNQATILGVQSEGYSVAASIKGQTYQQVPINLKGGIQLATTSGFAV
EEEECCCEEEEECCCCCEEEEEEECCCEEEEEEECCCEEEECCEEECCCEEEEEECCEEE
NQTSAVIAGTGDITARGERNAVISSSGGSSTEGSRALIASSNNAHIRGNQASRTILSSEN
ECCCEEEEECCCEEECCCCCEEEECCCCCCCCCCEEEEEECCCCEEECCCHHEEEECCCC
IILEEPYTVAGGHQSIKWLLDSVRGNGTFAGAISSSLGGYGEYFESSTGQLIHTGTIVTL
EEEECCEEEECCCHHHHHHHHHHCCCCEEEEEHHHCCCCCHHHHCCCCCCEEEEEEEEEE
RGEKIVPANVGDYMLGVISETSAFISGASSFVWQGRYLTNEFGGFIYETVTDEESGELIR
ECCEEECCCCCCHHEEHHHHHHHHHCCCCCEEEECCEEECCCCCEEEEEECCCCCCCEEE
VPKQNPDYDTALEANYHSRAARDEWHVVGLVGQHYVRIDETVNQGDYLTAHNGIGTKATE
CCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEECCCCCCCCCC
GSWKVMKITSAYTSEKGYGIALTVIK
CCEEEEEEEECCCCCCCCEEEEEEEC
>Mature Secondary Structure
MVHFKNCPDPSLNANSQSHPEFSSELEHIKTRMQNFIKHSVTDQNIEVTDARVTAEGEVT
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCHHH
SLLKERLDKEYYRLLSKITREVNVADFGAVPDGRDNTEAFRKAIGNGRVKVHVPAGEYLV
HHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHH
QGIKLPSWTTIVGQGKGITVIKLHEDTPAHEWVITNDDYQNGNRNIFVQGMSLDWNPSRQ
HCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCC
CGVRNPGGQFSSCLTFAKVEYGWIKDVEAINAGLHGIDITSPTYDHLPDTDWTKDGSRYI
CCCCCCCCCHHHHEEEEEECCCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEE
WIDNCVTYGSGDDGITTHYSEYIFISNCHSGNPRGTEFAEGVSNSNGIEIDDGSRHVWLL
EEECEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHCCCCCCCEEECCCCEEEEEE
NNFTSGNIRGVEVKAHELWPASQNVHIIGHISYRDVRAFDLRHIGHHQITDPESTTAYDV
ECCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCEEEEHHHHCCCCCCCCCCCCEEEEE
TLIDCSAVEPVFNSLYDAVTPRALVISAYKNVNVSGFTAIGDPDYDYKENPVVALQYRSQ
EEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEEECC
NITINGIKIRGFKKAGVDINLSGGSNKTDYIKISNFDIYKSAPKGISIGGGLYNVNILNG
EEEEEEEEEEEEEECCCEEEECCCCCCCCEEEEECEEEECCCCCCEEECCCEEEEEEEEC
TMITDNGTVAIQSPNNQATILGVQSEGYSVAASIKGQTYQQVPINLKGGIQLATTSGFAV
EEEECCCEEEEECCCCCEEEEEEECCCEEEEEEECCCEEEECCEEECCCEEEEEECCEEE
NQTSAVIAGTGDITARGERNAVISSSGGSSTEGSRALIASSNNAHIRGNQASRTILSSEN
ECCCEEEEECCCEEECCCCCEEEECCCCCCCCCCEEEEEECCCCEEECCCHHEEEECCCC
IILEEPYTVAGGHQSIKWLLDSVRGNGTFAGAISSSLGGYGEYFESSTGQLIHTGTIVTL
EEEECCEEEECCCHHHHHHHHHHCCCCEEEEEHHHCCCCCHHHHCCCCCCEEEEEEEEEE
RGEKIVPANVGDYMLGVISETSAFISGASSFVWQGRYLTNEFGGFIYETVTDEESGELIR
ECCEEECCCCCCHHEEHHHHHHHHHCCCCCEEEECCEEECCCCCEEEEEECCCCCCCEEE
VPKQNPDYDTALEANYHSRAARDEWHVVGLVGQHYVRIDETVNQGDYLTAHNGIGTKATE
CCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEECCCCCCCCCC
GSWKVMKITSAYTSEKGYGIALTVIK
CCEEEEEEEECCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377