Click here to switch to the map view.

The map label for this gene is ynaF

Identifier: 16078817

GI number: 16078817

Start: 1884968

End: 1885321

Strand: Direct

Name: ynaF

Synonym: BSU17540

Alternate gene names: 16078817

Gene position: 1884968-1885321 (Clockwise)

Preceding gene: 16078816

Following gene: 16078818

Centisome position: 44.71

GC content: 30.51

Gene sequence:

>354_bases
ATGGTATTATGTGATGATGAGAGATCTGCATTTTTATTAGTACTTGATGAAAGATTAGTGGATTTTGATTCTCAAGGTGG
AAACCATATTAGTGTTTATTTAGTTACTCACTTTGAGTTATCTGATCAATCGTATAAAGATGTATTAAGCTTTAATGATG
ATCTTTTGGGTATGGAGCATAACTGTTCGTATGCAATGGATATTCTAAGCGTTAAAGAGGAACTTGATTTCGATTTCCCA
TTTAATATGCTTGCAATAAAAAGCTATGTACAAGAATTAATAAAAATGTTAGGGATTGATATCACTCTGCCTGAAATGAA
AGAAAGAGATTTTGACAAACTTTCTCAAAACTAA

Upstream 100 bases:

>100_bases
AAGTGCATGTAATACTTTTTTTAAAAACGATTTATCAGGAAAGGCAGAATTAGATTATGAGGGCCTTACATACAAGATGT
AAACGGTTATTGAAACTAAG

Downstream 100 bases:

>100_bases
ATAAAACTACTATTTTTAAAGAGAACGGAGACTTGCTTTCAATATGAATGTTAAAAAAGCTGCAGCTGTTTTTTCAATCA
CTATTCCAATTATCTCAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MVLCDDERSAFLLVLDERLVDFDSQGGNHISVYLVTHFELSDQSYKDVLSFNDDLLGMEHNCSYAMDILSVKEELDFDFP
FNMLAIKSYVQELIKMLGIDITLPEMKERDFDKLSQN

Sequences:

>Translated_117_residues
MVLCDDERSAFLLVLDERLVDFDSQGGNHISVYLVTHFELSDQSYKDVLSFNDDLLGMEHNCSYAMDILSVKEELDFDFP
FNMLAIKSYVQELIKMLGIDITLPEMKERDFDKLSQN
>Mature_117_residues
MVLCDDERSAFLLVLDERLVDFDSQGGNHISVYLVTHFELSDQSYKDVLSFNDDLLGMEHNCSYAMDILSVKEELDFDFP
FNMLAIKSYVQELIKMLGIDITLPEMKERDFDKLSQN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNAF_BACSU (P94484)

Other databases:

- EMBL:   U66480
- EMBL:   AL009126
- PIR:   F69887
- RefSeq:   NP_389636.1
- EnsemblBacteria:   EBBACT00000001436
- GeneID:   938101
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU17540
- NMPDR:   fig|224308.1.peg.1758
- GenoList:   BSU17540
- GeneTree:   EBGT00050000002802
- HOGENOM:   HBG338533
- OMA:   FNDDLLG
- ProtClustDB:   CLSK887339
- BioCyc:   BSUB:BSU17540-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13567; Mature: 13567

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLCDDERSAFLLVLDERLVDFDSQGGNHISVYLVTHFELSDQSYKDVLSFNDDLLGMEH
CEEECCCCCEEEEEEECHHHCCCCCCCCEEEEEEEEEEEECCCHHHHHHHCCCCCCCCCC
NCSYAMDILSVKEELDFDFPFNMLAIKSYVQELIKMLGIDITLPEMKERDFDKLSQN
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
>Mature Secondary Structure
MVLCDDERSAFLLVLDERLVDFDSQGGNHISVYLVTHFELSDQSYKDVLSFNDDLLGMEH
CEEECCCCCEEEEEEECHHHCCCCCCCCEEEEEEEEEEEECCCHHHHHHHCCCCCCCCCC
NCSYAMDILSVKEELDFDFPFNMLAIKSYVQELIKMLGIDITLPEMKERDFDKLSQN
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377