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The map label for this gene is ymaD

Identifier: 16078791

GI number: 16078791

Start: 1864225

End: 1864677

Strand: Direct

Name: ymaD

Synonym: BSU17280

Alternate gene names: 16078791

Gene position: 1864225-1864677 (Clockwise)

Preceding gene: 16078790

Following gene: 255767405

Centisome position: 44.22

GC content: 46.14

Gene sequence:

>453_bases
ATGGCAGATCATCATTTTTATTTAAAAGCGAACTGGCCGGGTAACCGTAATGATGTCGGTACGATCGAAAGCGGAAACCT
GATCACATCGATTTCCATTCCTAAAGAAATGGATGGCCCGGGAGAAGGGACCAACCCAGATGAAATGCTTCTCGGGGCGG
CAGCGACCTGTTACATTATTACACTTGCAGCGATGATGGAGAGAAGCGGGCTGGAAAAAGAAGACTTACAGATGGAGTCA
GAAGGCATTGTCAACGTTACAAAAGGAGTCTTTACATACAAAAAGATCATTCACCGTCCCTCTGTCGTGCTTAAACATGA
TGCTTCACAAGACGACGTCGCATTGGCGCACAAACTTTGTAAAAAAGCGGAGTCGTCATGCATGATTTCGCGTGCAATTC
AAGGAAATGTCGAGCTGCAGCTTGAAGCCTCTGTGAAACTGGGTGGAGAATAA

Upstream 100 bases:

>100_bases
CAAAGGTGTCCTGGAAAAAGAGTATTCGTAACAAGCAGATCAGAAGACAAAATAAGAGAAGATCAGTAGACTGAAATAGG
ATAAAAAAGGAGGCAAAACA

Downstream 100 bases:

>100_bases
AGAAAACAGACGGTCACTCACAGGCCGTCTGTTTTTTATCTTCAGCGTGGGCTTTCGATTGATTTAGCACGACCACGCCT
GCAATGACAAGCGTGAGACC

Product: peroxiredoxin-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MADHHFYLKANWPGNRNDVGTIESGNLITSISIPKEMDGPGEGTNPDEMLLGAAATCYIITLAAMMERSGLEKEDLQMES
EGIVNVTKGVFTYKKIIHRPSVVLKHDASQDDVALAHKLCKKAESSCMISRAIQGNVELQLEASVKLGGE

Sequences:

>Translated_150_residues
MADHHFYLKANWPGNRNDVGTIESGNLITSISIPKEMDGPGEGTNPDEMLLGAAATCYIITLAAMMERSGLEKEDLQMES
EGIVNVTKGVFTYKKIIHRPSVVLKHDASQDDVALAHKLCKKAESSCMISRAIQGNVELQLEASVKLGGE
>Mature_149_residues
ADHHFYLKANWPGNRNDVGTIESGNLITSISIPKEMDGPGEGTNPDEMLLGAAATCYIITLAAMMERSGLEKEDLQMESE
GIVNVTKGVFTYKKIIHRPSVVLKHDASQDDVALAHKLCKKAESSCMISRAIQGNVELQLEASVKLGGE

Specific function: Unknown

COG id: COG1764

COG function: function code O; Predicted redox protein, regulator of disulfide bond formation

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the osmC/ohr family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YMAD_BACSU (O31790)

Other databases:

- EMBL:   AL009126
- PIR:   F69883
- RefSeq:   NP_389610.1
- ProteinModelPortal:   O31790
- SMR:   O31790
- EnsemblBacteria:   EBBACT00000000905
- GeneID:   940058
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU17280
- NMPDR:   fig|224308.1.peg.1732
- GenoList:   BSU17280
- GeneTree:   EBGT00050000001862
- HOGENOM:   HBG338011
- OMA:   SCMISRA
- ProtClustDB:   CLSK876739
- BioCyc:   BSUB:BSU17280-MONOMER
- InterPro:   IPR015946
- InterPro:   IPR019905
- InterPro:   IPR003718
- Gene3D:   G3DSA:3.30.300.20
- TIGRFAMs:   TIGR03563

Pfam domain/function: PF02566 OsmC; SSF82784 OsmC

EC number: NA

Molecular weight: Translated: 16272; Mature: 16141

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADHHFYLKANWPGNRNDVGTIESGNLITSISIPKEMDGPGEGTNPDEMLLGAAATCYII
CCCCEEEEEECCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
TLAAMMERSGLEKEDLQMESEGIVNVTKGVFTYKKIIHRPSVVLKHDASQDDVALAHKLC
HHHHHHHHCCCCHHHHEECCCCCEEHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
KKAESSCMISRAIQGNVELQLEASVKLGGE
HHHHHHHHHHHHCCCCEEEEEEEEEECCCC
>Mature Secondary Structure 
ADHHFYLKANWPGNRNDVGTIESGNLITSISIPKEMDGPGEGTNPDEMLLGAAATCYII
CCCEEEEEECCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
TLAAMMERSGLEKEDLQMESEGIVNVTKGVFTYKKIIHRPSVVLKHDASQDDVALAHKLC
HHHHHHHHCCCCHHHHEECCCCCEEHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
KKAESSCMISRAIQGNVELQLEASVKLGGE
HHHHHHHHHHHHCCCCEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377