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The map label for this gene is rbfA

Identifier: 16078728

GI number: 16078728

Start: 1736451

End: 1736804

Strand: Direct

Name: rbfA

Synonym: BSU16650

Alternate gene names: 16078728

Gene position: 1736451-1736804 (Clockwise)

Preceding gene: 16078727

Following gene: 16078729

Centisome position: 41.19

GC content: 43.5

Gene sequence:

>354_bases
TTGAGTATGAGAGCAAACCGTGTCGGCGAGCAAATGAAAAAAGAACTCGGTGATATTATCAGCCGCAAGCTGAAAGACCC
GAGAATTGGTTTTCTGACAGTAACGGATGTACGTGTATCAGGTGATTTGCAAATTGCAAAGGTGTATATCTCGGTTCTCG
GTGACGAGAAAAAACGGGAAGAAGCGCTGAAAGGGCTGGCAAAAGCGAAAGGATTTATCCGATCCGAAATCGGCAGCCGC
ATCAGACTTCGAAAAACGCCTGAAATTGAATTTGAGTTCGATGAATCAATCGATTACGGGAATCGGATCGAAACACTGAT
TCACGAATTACATTCAGAGAAACCATCTGAATAA

Upstream 100 bases:

>100_bases
GAAAAAGAACTGCAGCGCGTCCTAGCGTTTATCGATTCTTTTCCTGAAATTGAACGGACGATCACTAGGACAGAGTGGTT
TTAACTTAGAGGTGATTGAA

Downstream 100 bases:

>100_bases
AAAAAGAGAGGATAGGCGTATATCGTCTGTCCTCTTTCTTCGTTTATAAGAAAAAAACTCAAAAGAAGGAGTGAAAGGCA
AATGGTTAACGGAGTTCTCC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MSMRANRVGEQMKKELGDIISRKLKDPRIGFLTVTDVRVSGDLQIAKVYISVLGDEKKREEALKGLAKAKGFIRSEIGSR
IRLRKTPEIEFEFDESIDYGNRIETLIHELHSEKPSE

Sequences:

>Translated_117_residues
MSMRANRVGEQMKKELGDIISRKLKDPRIGFLTVTDVRVSGDLQIAKVYISVLGDEKKREEALKGLAKAKGFIRSEIGSR
IRLRKTPEIEFEFDESIDYGNRIETLIHELHSEKPSE
>Mature_116_residues
SMRANRVGEQMKKELGDIISRKLKDPRIGFLTVTDVRVSGDLQIAKVYISVLGDEKKREEALKGLAKAKGFIRSEIGSRI
RLRKTPEIEFEFDESIDYGNRIETLIHELHSEKPSE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=107, Percent_Identity=42.9906542056075, Blast_Score=87, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13388; Mature: 13256

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMRANRVGEQMKKELGDIISRKLKDPRIGFLTVTDVRVSGDLQIAKVYISVLGDEKKRE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCHHHH
EALKGLAKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYGNRIETLIHELHSEKPSE
HHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SMRANRVGEQMKKELGDIISRKLKDPRIGFLTVTDVRVSGDLQIAKVYISVLGDEKKRE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCHHHH
EALKGLAKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYGNRIETLIHELHSEKPSE
HHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA