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The map label for this gene is ylxR

Identifier: 16078724

GI number: 16078724

Start: 1733410

End: 1733685

Strand: Direct

Name: ylxR

Synonym: BSU16610

Alternate gene names: 16078724

Gene position: 1733410-1733685 (Clockwise)

Preceding gene: 16078723

Following gene: 16078725

Centisome position: 41.12

GC content: 39.86

Gene sequence:

>276_bases
GTGAATAAACACAAAAAGATCCCATTACGCAAATGTGTAGTGACTGGTGAAATGAAGCCTAAAAAGGAACTGATCCGAGT
TGTACGGTCGAAAGAAGGCGAAATCTCAGTAGACCCGACCGGAAAAAAGAATGGGCGGGGTGCTTATTTAACGCTGGATA
AAGAGTGCATCTTAGCAGCAAAAAAGAAAAACACTTTGCAAAATCAATTTCAATCACAAATCGATGACCAGATTTTCGAT
GAATTGCTGGAACTGGCGGAAAAGGTGAAAAAATAA

Upstream 100 bases:

>100_bases
AGAGAACTTGGAATCTATCCGAGAGAACTTGAAGAAGATGATGAGCCGCTCTTTACGGAGCCTGAAACTGCTGAATCGGA
TGAATAAGAGGTGACTTTAG

Downstream 100 bases:

>100_bases
AATGTCTGGAATGGAATGGTTTCCCTTGCTGGGTCTGGCCAATCGAGCTCGTAAGGTCGTGTCAGGCGAAGACTTGGTAA
TAAAAGAAATCAGGAATGCG

Product: RNA binding protein; new fold

Products: NA

Alternate protein names: ORF3

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MNKHKKIPLRKCVVTGEMKPKKELIRVVRSKEGEISVDPTGKKNGRGAYLTLDKECILAAKKKNTLQNQFQSQIDDQIFD
ELLELAEKVKK

Sequences:

>Translated_91_residues
MNKHKKIPLRKCVVTGEMKPKKELIRVVRSKEGEISVDPTGKKNGRGAYLTLDKECILAAKKKNTLQNQFQSQIDDQIFD
ELLELAEKVKK
>Mature_91_residues
MNKHKKIPLRKCVVTGEMKPKKELIRVVRSKEGEISVDPTGKKNGRGAYLTLDKECILAAKKKNTLQNQFQSQIDDQIFD
ELLELAEKVKK

Specific function: Unknown

COG id: COG2740

COG function: function code K; Predicted nucleic-acid-binding protein implicated in transcription termination

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YLXR_BACSU (P32728)

Other databases:

- EMBL:   Z18631
- EMBL:   AL009126
- PIR:   D36905
- RefSeq:   NP_389543.1
- ProteinModelPortal:   P32728
- SMR:   P32728
- EnsemblBacteria:   EBBACT00000000828
- GeneID:   939653
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU16610
- NMPDR:   fig|224308.1.peg.1664
- GenoList:   BSU16610
- GeneTree:   EBGT00050000001328
- HOGENOM:   HBG709017
- OMA:   RGFYIVK
- ProtClustDB:   CLSK2301461
- BioCyc:   BSUB:BSU16610-MONOMER
- InterPro:   IPR007393
- Gene3D:   G3DSA:3.30.1230.10

Pfam domain/function: PF04296 DUF448; SSF64376 DUF448

EC number: NA

Molecular weight: Translated: 10409; Mature: 10409

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKHKKIPLRKCVVTGEMKPKKELIRVVRSKEGEISVDPTGKKNGRGAYLTLDKECILAA
CCCCCCCCHHHHEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEECHHHHHHH
KKKNTLQNQFQSQIDDQIFDELLELAEKVKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKHKKIPLRKCVVTGEMKPKKELIRVVRSKEGEISVDPTGKKNGRGAYLTLDKECILAA
CCCCCCCCHHHHEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEECHHHHHHH
KKKNTLQNQFQSQIDDQIFDELLELAEKVKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8491709; 9384377