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The map label for this gene is rimM

Identifier: 16078665

GI number: 16078665

Start: 1674650

End: 1675174

Strand: Direct

Name: rimM

Synonym: BSU16020

Alternate gene names: 16078665

Gene position: 1674650-1675174 (Clockwise)

Preceding gene: 16078664

Following gene: 16078666

Centisome position: 39.73

GC content: 40.0

Gene sequence:

>525_bases
ATGACAAAGCGATGGTTTAATGTAGGCAAAATCGTAAATACCCACGGAATCAAAGGCGAAGTGCGGGTGATTTCAAAAAC
AGATTTTGCCGAAGAACGATACAAGCCGGGAAACACGCTGTATTTGTTTATGGACGGCCGTAACGAACCAGTGGAGGTAA
CGGTAAACACACATAGACTGCATAAGCAATTTCATCTCCTGCAGTTTAAAGAAAGACAAAACCTAAATGAAGTAGAAGAG
CTGAAAAACGCAATCATTAAAGTTCCTGAAGAAGAATTAGGAGAGCTGAATGAGGGTGAATTTTATTTCCACGAAATTAT
TGGGTGTGAAGTATTTACTGAAGAAGGCGAACTCATCGGAAAGGTCAAAGAAATTTTGACGCCTGGAGCCAATGACGTTT
GGGTCATCGGACGAAAAGGAAAAAAAGACGCACTCATTCCTTACATTGAATCAGTGGTTAAACATATCGATGTCAGGGAA
AAGAAAATTGAGATTGAACTCATGGAAGGGTTAATAGACGAATGA

Upstream 100 bases:

>100_bases
CTGACGATTGAAGCCGGGGATGACTGGCATGAGAAAACAGCAGCGAACACCATCGTCATAAAAGACGGAAAAGTAATTGA
AATTCGCCAGAGGTGATCAT

Downstream 100 bases:

>100_bases
AAATCGATTTTTTGACGCTGTTTCCCGAAATGTTTGAAGGCGTGCTCGGCTCATCGATTCTTCAAAAAGCCCAGGAAAAA
GATGCGGTGCAGTTTCAAGT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MTKRWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMDGRNEPVEVTVNTHRLHKQFHLLQFKERQNLNEVEE
LKNAIIKVPEEELGELNEGEFYFHEIIGCEVFTEEGELIGKVKEILTPGANDVWVIGRKGKKDALIPYIESVVKHIDVRE
KKIEIELMEGLIDE

Sequences:

>Translated_174_residues
MTKRWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMDGRNEPVEVTVNTHRLHKQFHLLQFKERQNLNEVEE
LKNAIIKVPEEELGELNEGEFYFHEIIGCEVFTEEGELIGKVKEILTPGANDVWVIGRKGKKDALIPYIESVVKHIDVRE
KKIEIELMEGLIDE
>Mature_173_residues
TKRWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMDGRNEPVEVTVNTHRLHKQFHLLQFKERQNLNEVEEL
KNAIIKVPEEELGELNEGEFYFHEIIGCEVFTEEGELIGKVKEILTPGANDVWVIGRKGKKDALIPYIESVVKHIDVREK
KIEIELMEGLIDE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=172, Percent_Identity=30.2325581395349, Blast_Score=87, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BACSU (O31740)

Other databases:

- EMBL:   AL009126
- PIR:   E69880
- RefSeq:   NP_389484.1
- ProteinModelPortal:   O31740
- SMR:   O31740
- EnsemblBacteria:   EBBACT00000003235
- GeneID:   935999
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU16020
- NMPDR:   fig|224308.1.peg.1604
- GenoList:   BSU16020
- GeneTree:   EBGT00050000002368
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- PhylomeDB:   O31740
- ProtClustDB:   PRK00122
- BioCyc:   BSUB:BSU16020-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20203; Mature: 20072

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKRWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMDGRNEPVEVTVNTHRL
CCCCCCCCCCEEECCCCCCEEEEEECCCCHHHHCCCCCEEEEEECCCCCCEEEEECHHHH
HKQFHLLQFKERQNLNEVEELKNAIIKVPEEELGELNEGEFYFHEIIGCEVFTEEGELIG
HHHHHHHHHHHHCCCCHHHHHHHHHEECCHHHHCCCCCCCEEEEEHHCCEEECCCCHHHH
KVKEILTPGANDVWVIGRKGKKDALIPYIESVVKHIDVREKKIEIELMEGLIDE
HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKRWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMDGRNEPVEVTVNTHRL
CCCCCCCCCEEECCCCCCEEEEEECCCCHHHHCCCCCEEEEEECCCCCCEEEEECHHHH
HKQFHLLQFKERQNLNEVEELKNAIIKVPEEELGELNEGEFYFHEIIGCEVFTEEGELIG
HHHHHHHHHHHHCCCCHHHHHHHHHEECCHHHHCCCCCCCEEEEEHHCCEEECCCCHHHH
KVKEILTPGANDVWVIGRKGKKDALIPYIESVVKHIDVREKKIEIELMEGLIDE
HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377