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The map label for this gene is ylqC

Identifier: 16078663

GI number: 16078663

Start: 1673892

End: 1674137

Strand: Direct

Name: ylqC

Synonym: BSU16000

Alternate gene names: 16078663

Gene position: 1673892-1674137 (Clockwise)

Preceding gene: 16078662

Following gene: 16078664

Centisome position: 39.71

GC content: 42.28

Gene sequence:

>246_bases
ATGACTGATCAACACTTGGAAGATTTGATTGTCCACATTGTGACGCCGCTTGTTGATCATCCAGATGACATTCGCGTCAT
AAGAGAAGAAACCGATCAAAAGATTGCGCTGCGCTTATCTGTCCATAAGTCAGATACCGGTAAAGTTATCGGAAAGCAAG
GCCGGACTGCAAAAGCGATTCGAACAGCTGTATTTGCAGCTGGCGTACAGTCTTCTAAGAAAGTTCAATTTGAAATATTT
GACTAA

Upstream 100 bases:

>100_bases
AATGGCTTCAAACTGGAGCGAAACCATCTGATACAGTTCGCAACTTGTTCTCTAGCCAAGGAATCATGGAAAAATTCCAC
AACGCTAAACAAGGCAAGTA

Downstream 100 bases:

>100_bases
AAGGGAGAGGGCCGGCACCTCCCCTTTTTTTACACGCAAAAAAAGGGTAAACTGATAGAAGCTTAGGCAAAATAGAAAAG
CCTGGACGAGTAAAAGTTTT

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MTDQHLEDLIVHIVTPLVDHPDDIRVIREETDQKIALRLSVHKSDTGKVIGKQGRTAKAIRTAVFAAGVQSSKKVQFEIF
D

Sequences:

>Translated_81_residues
MTDQHLEDLIVHIVTPLVDHPDDIRVIREETDQKIALRLSVHKSDTGKVIGKQGRTAKAIRTAVFAAGVQSSKKVQFEIF
D
>Mature_80_residues
TDQHLEDLIVHIVTPLVDHPDDIRVIREETDQKIALRLSVHKSDTGKVIGKQGRTAKAIRTAVFAAGVQSSKKVQFEIFD

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YLQC_BACSU (O31738)

Other databases:

- EMBL:   AL009126
- PIR:   C69880
- RefSeq:   NP_389482.1
- ProteinModelPortal:   O31738
- SMR:   O31738
- EnsemblBacteria:   EBBACT00000003038
- GeneID:   936821
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU16000
- NMPDR:   fig|224308.1.peg.1602
- GenoList:   BSU16000
- GeneTree:   EBGT00050000002879
- HOGENOM:   HBG668070
- OMA:   ETDENAN
- ProtClustDB:   CLSK887297
- BioCyc:   BSUB:BSU16000-MONOMER
- HAMAP:   MF_00088
- InterPro:   IPR009019
- InterPro:   IPR020627

Pfam domain/function: SSF54814 KH_prok

EC number: NA

Molecular weight: Translated: 9063; Mature: 8931

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQHLEDLIVHIVTPLVDHPDDIRVIREETDQKIALRLSVHKSDTGKVIGKQGRTAKAI
CCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEEEECCCCCCCEECCCCCHHHHH
RTAVFAAGVQSSKKVQFEIFD
HHHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure 
TDQHLEDLIVHIVTPLVDHPDDIRVIREETDQKIALRLSVHKSDTGKVIGKQGRTAKAI
CHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEEEECCCCCCCEECCCCCHHHHH
RTAVFAAGVQSSKKVQFEIFD
HHHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377