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The map label for this gene is yloC

Identifier: 16078630

GI number: 16078630

Start: 1640720

End: 1641595

Strand: Direct

Name: yloC

Synonym: BSU15660

Alternate gene names: 16078630

Gene position: 1640720-1641595 (Clockwise)

Preceding gene: 16078629

Following gene: 18677778

Centisome position: 38.92

GC content: 44.29

Gene sequence:

>876_bases
ATGATACGAAGTATGACAGGCTTCGGCAGTGCAAGCAAAACACAAGACGATCTCTCTGTAAGCGTTGAACTTAAATCTGT
GAACTACAGATTTAAAGAAGTGAACGCTCGTTTGCCAAGGCCTTTGCTATATTTTGAAGATAAGCTGAAACAGACCATTC
TGCAGCATATTCAGCGCGGAAGAATTGAGCTTTTCGTATCCGTTGACAGCGATATGCTTGTTGAGAAAAGGCTTGAAATT
GATTGGCCGCTGCTCGATGAGTTTGTCGCAGCCGCGAGAGATATGAAGAAGCGGTATCAATTGTCTGCAGAGCCCGATGT
AATGGATTTCTTTAAGCTTGATCATGTCGTCCAGGTTCATGAAGAACAGACGCAAAATGACAAGCTGGAGGCGTTGATCA
TCGATGCTGCAGAAGAAGCGGTAAAAGGTCTCTGTGAAATGCGTGAAAAAGAGGGGCTGCTCTTAGCGAAAGACTGCCTG
ATGCATATTGATCAGCTTGAAGAGCTGGTGAGAGAAACTGAATTGCTGGCTGCAGATGTCGTATCTCGTTACCGGGAACG
GCTGTATGCCAGAATCAAAGAATGGACTGAAGACGTATTAGACGAGAGCCGGCTTGTAACAGAATGCGCTATTTTTGCAG
ACCGCTCTGATATCACTGAAGAGATTACAAGGCTGAAGAGCCACTTCGCCCAGTTTCGTGATATATTAGCTAGTGGCGGA
GCTGTCGGGCGCAAACTCGACTTTCTTGTTCAGGAGCTCAATCGGGAAGCAAATACGATCGGCTCAAAAGCAAATGATCA
TCAGATCACAAAGCTTGTCGTTGAAATGAAAAGTTCTATTGAAAAAATAAAAGAACAAGTGCAAAATATAGAATAG

Upstream 100 bases:

>100_bases
TTAACAAGAAAAAAATAAATTCATATGATATAATCTTAGGGGTAATAGCGTGTCTATTGCCCTTTTATTATGAGAACAGG
GAAGAATTGGGTGTTTTAAA

Downstream 100 bases:

>100_bases
TGACTGTGCGTATTGTTTACAGACGGTCTTACTAGGCTAAACTAGAGACGTCTATTTTACAGGGGGAACGTAGAAGATGA
CGATTAAACTGATTAATATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MIRSMTGFGSASKTQDDLSVSVELKSVNYRFKEVNARLPRPLLYFEDKLKQTILQHIQRGRIELFVSVDSDMLVEKRLEI
DWPLLDEFVAAARDMKKRYQLSAEPDVMDFFKLDHVVQVHEEQTQNDKLEALIIDAAEEAVKGLCEMREKEGLLLAKDCL
MHIDQLEELVRETELLAADVVSRYRERLYARIKEWTEDVLDESRLVTECAIFADRSDITEEITRLKSHFAQFRDILASGG
AVGRKLDFLVQELNREANTIGSKANDHQITKLVVEMKSSIEKIKEQVQNIE

Sequences:

>Translated_291_residues
MIRSMTGFGSASKTQDDLSVSVELKSVNYRFKEVNARLPRPLLYFEDKLKQTILQHIQRGRIELFVSVDSDMLVEKRLEI
DWPLLDEFVAAARDMKKRYQLSAEPDVMDFFKLDHVVQVHEEQTQNDKLEALIIDAAEEAVKGLCEMREKEGLLLAKDCL
MHIDQLEELVRETELLAADVVSRYRERLYARIKEWTEDVLDESRLVTECAIFADRSDITEEITRLKSHFAQFRDILASGG
AVGRKLDFLVQELNREANTIGSKANDHQITKLVVEMKSSIEKIKEQVQNIE
>Mature_291_residues
MIRSMTGFGSASKTQDDLSVSVELKSVNYRFKEVNARLPRPLLYFEDKLKQTILQHIQRGRIELFVSVDSDMLVEKRLEI
DWPLLDEFVAAARDMKKRYQLSAEPDVMDFFKLDHVVQVHEEQTQNDKLEALIIDAAEEAVKGLCEMREKEGLLLAKDCL
MHIDQLEELVRETELLAADVVSRYRERLYARIKEWTEDVLDESRLVTECAIFADRSDITEEITRLKSHFAQFRDILASGG
AVGRKLDFLVQELNREANTIGSKANDHQITKLVVEMKSSIEKIKEQVQNIE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family

Homologues:

Organism=Escherichia coli, GI1790075, Length=291, Percent_Identity=30.2405498281787, Blast_Score=121, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YLOC_BACSU (O34441)

Other databases:

- EMBL:   Y13937
- EMBL:   AL009126
- PIR:   A69878
- RefSeq:   NP_389449.1
- EnsemblBacteria:   EBBACT00000001300
- GeneID:   936454
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU15660
- NMPDR:   fig|224308.1.peg.1568
- GenoList:   BSU15660
- GeneTree:   EBGT00050000001701
- HOGENOM:   HBG476761
- OMA:   VSQFREQ
- PhylomeDB:   O34441
- ProtClustDB:   PRK11820
- BioCyc:   BSUB:BSU15660-MONOMER
- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527
- TIGRFAMs:   TIGR00255

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N

EC number: NA

Molecular weight: Translated: 33631; Mature: 33631

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSMTGFGSASKTQDDLSVSVELKSVNYRFKEVNARLPRPLLYFEDKLKQTILQHIQRG
CCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
RIELFVSVDSDMLVEKRLEIDWPLLDEFVAAARDMKKRYQLSAEPDVMDFFKLDHVVQVH
CEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
EEQTQNDKLEALIIDAAEEAVKGLCEMREKEGLLLAKDCLMHIDQLEELVRETELLAADV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSRYRERLYARIKEWTEDVLDESRLVTECAIFADRSDITEEITRLKSHFAQFRDILASGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
AVGRKLDFLVQELNREANTIGSKANDHQITKLVVEMKSSIEKIKEQVQNIE
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRSMTGFGSASKTQDDLSVSVELKSVNYRFKEVNARLPRPLLYFEDKLKQTILQHIQRG
CCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
RIELFVSVDSDMLVEKRLEIDWPLLDEFVAAARDMKKRYQLSAEPDVMDFFKLDHVVQVH
CEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
EEQTQNDKLEALIIDAAEEAVKGLCEMREKEGLLLAKDCLMHIDQLEELVRETELLAADV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSRYRERLYARIKEWTEDVLDESRLVTECAIFADRSDITEEITRLKSHFAQFRDILASGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
AVGRKLDFLVQELNREANTIGSKANDHQITKLVVEMKSSIEKIKEQVQNIE
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377