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The map label for this gene is yloA

Identifier: 16078628

GI number: 16078628

Start: 1636131

End: 1637849

Strand: Reverse

Name: yloA

Synonym: BSU15640

Alternate gene names: 16078628

Gene position: 1637849-1636131 (Counterclockwise)

Preceding gene: 16078645

Following gene: 255767344

Centisome position: 38.85

GC content: 43.98

Gene sequence:

>1719_bases
TTGCATATGTCGTTTGATGGCATGTTTACATACGGAATGACACACGAACTTAACGAGAAAATAATGGGCGGACGAATTAC
AAAAATCCATCAGCCATATAAGCACGATGTGATTTTCCACATCCGTGCCAAGGGAAAAAACCAAAAACTATTATTATCGG
CACATCCGAGCTATTCACGGGTGCATATCACGGCACAAGCTTATGAAAATCCAAGCGAACCGCCAATGTTTTGCATGTTG
CTGAGAAAGCATATCGAAGGCGGATTCATTGAGAAAATTGAACAAGCGGGCTTAGACCGCATTATGATTTTTCATATCAA
AAGCCGAAACGAAATTGGCGATGAAACCGTACGAAAGCTTTATGTAGAAATTATGGGCCGCCACAGCAATATCATTTTGA
CTGACGCAGCAGAAAATGTGATTATCGACGGACTTAAGCATTTATCACCGTCAATGAACAGCTACCGTACAGTACTGCCC
GGCCAAGATTATAAGCTTCCGCCTGCTCAGGACAAAATATCGCCTCTTGAGGCGTCAGAAGATGATATTTTGCGTCACCT
CAGCTTTCAAGAAGGAAGGCTTGATAAACAAATTGTCGACCACTTTTCAGGCGTGTCTCCGCTTTTCGCCAAAGAAGCGG
TTCACAGAGCAGGCCTTGCCAACAAAGTCACACTGCCAAAAGCGTTGCTGGCACTGTTTGCCGAAGTGAAAGAGCACCGT
TTCATTCCCAACATTACGACTGTAAACGGAAAGGAATATTTTTATCTGCTGGAGCTGACTCATCTAAAGGGCGAAGCGCG
CCGTTTTGATTCATTAAGCGAACTGCTCGACCGTTTTTATTTCGGAAAAGCTGAACGAGACCGGGTTAAGCAACAGGCTC
AGGATCTTGAGCGTTTTGTTGTGAACGAACGGAAGAAGAATGCCAACAAAATCAAAAAATTAGAGAAAACCCTGGAGTAT
TCGGAAAACGCGAAGGAATTTCAGCTTTACGGAGAGCTTTTAACCGCTAATTTATATATGCTGAAAAAAGGTGATAAACA
GGCTGAGGTCATCAATTATTATGATGAAGAAAGCCCGACAATCACGATTCCTTTAAACCCGAACAAAACGCCTTCTGAAA
ACGCACAGGCCTATTTCACGAAGTATCAGAAAGCGAAAAATTCGGTCGCAGTTGTCGAGGAGCAAATCAGGCTGGCACAG
GAAGAGATCGAATATTTTGATCAGCTGATTCAGCAGCTTTCGTCCGCTTCTCCCCGGGATATCAGCGAAATCAGGGAAGA
GCTTGTTGAGGGCAAATATTTACGCCCTAAGCAGCAAAAAGGCCAGAAAAAGCAAAAACCGCACAATCCGGTGTTAGAAA
CATATGAATCCACCTCAGGGCTGACAATTTTAGTGGGTAAGAACAATCGTCAAAATGAATATTTAACGACAAGAGTGGCG
GCCAGAGACGATATCTGGCTTCACACGAAGGACATTCCCGGCTCCCACGTTGTGATCAGAAGCAGCGAACCTGATGAGCA
AACAATCATGGAAGCCGCGACAATTGCAGCTTATTTTTCAAAAGCTAAAGATTCAAGTTCAGTGCCTGTAGATTATACAA
AAATCAGGCATGTCAAAAAACCAAACGGCGCGAAACCCGGTTTCGTCACTTATGACAGCCAGCATACCGTCTTTGTCACG
CCTGATGCTGATACTGTCATCAAGCTCAAAAAAAGCTGA

Upstream 100 bases:

>100_bases
CCCTGCTCTCTTATAGAGATATCACTCTATAAGCATGCTTATTCTGACTCGTCCCATTTCATGCTATAATTATCGAATGC
AGGAAGAATGAGAGGGTGTA

Downstream 100 bases:

>100_bases
GCCGCATAAAGAAAAGCCAGAGCATTTGTATGCTCTGGCTTATTTCTTTCTTCTCATCTGATAAAGCCTGTTCACTTCAG
CAACAAAATCGCCGTCAATC

Product: persistent RNA/DNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MHMSFDGMFTYGMTHELNEKIMGGRITKIHQPYKHDVIFHIRAKGKNQKLLLSAHPSYSRVHITAQAYENPSEPPMFCML
LRKHIEGGFIEKIEQAGLDRIMIFHIKSRNEIGDETVRKLYVEIMGRHSNIILTDAAENVIIDGLKHLSPSMNSYRTVLP
GQDYKLPPAQDKISPLEASEDDILRHLSFQEGRLDKQIVDHFSGVSPLFAKEAVHRAGLANKVTLPKALLALFAEVKEHR
FIPNITTVNGKEYFYLLELTHLKGEARRFDSLSELLDRFYFGKAERDRVKQQAQDLERFVVNERKKNANKIKKLEKTLEY
SENAKEFQLYGELLTANLYMLKKGDKQAEVINYYDEESPTITIPLNPNKTPSENAQAYFTKYQKAKNSVAVVEEQIRLAQ
EEIEYFDQLIQQLSSASPRDISEIREELVEGKYLRPKQQKGQKKQKPHNPVLETYESTSGLTILVGKNNRQNEYLTTRVA
ARDDIWLHTKDIPGSHVVIRSSEPDEQTIMEAATIAAYFSKAKDSSSVPVDYTKIRHVKKPNGAKPGFVTYDSQHTVFVT
PDADTVIKLKKS

Sequences:

>Translated_572_residues
MHMSFDGMFTYGMTHELNEKIMGGRITKIHQPYKHDVIFHIRAKGKNQKLLLSAHPSYSRVHITAQAYENPSEPPMFCML
LRKHIEGGFIEKIEQAGLDRIMIFHIKSRNEIGDETVRKLYVEIMGRHSNIILTDAAENVIIDGLKHLSPSMNSYRTVLP
GQDYKLPPAQDKISPLEASEDDILRHLSFQEGRLDKQIVDHFSGVSPLFAKEAVHRAGLANKVTLPKALLALFAEVKEHR
FIPNITTVNGKEYFYLLELTHLKGEARRFDSLSELLDRFYFGKAERDRVKQQAQDLERFVVNERKKNANKIKKLEKTLEY
SENAKEFQLYGELLTANLYMLKKGDKQAEVINYYDEESPTITIPLNPNKTPSENAQAYFTKYQKAKNSVAVVEEQIRLAQ
EEIEYFDQLIQQLSSASPRDISEIREELVEGKYLRPKQQKGQKKQKPHNPVLETYESTSGLTILVGKNNRQNEYLTTRVA
ARDDIWLHTKDIPGSHVVIRSSEPDEQTIMEAATIAAYFSKAKDSSSVPVDYTKIRHVKKPNGAKPGFVTYDSQHTVFVT
PDADTVIKLKKS
>Mature_572_residues
MHMSFDGMFTYGMTHELNEKIMGGRITKIHQPYKHDVIFHIRAKGKNQKLLLSAHPSYSRVHITAQAYENPSEPPMFCML
LRKHIEGGFIEKIEQAGLDRIMIFHIKSRNEIGDETVRKLYVEIMGRHSNIILTDAAENVIIDGLKHLSPSMNSYRTVLP
GQDYKLPPAQDKISPLEASEDDILRHLSFQEGRLDKQIVDHFSGVSPLFAKEAVHRAGLANKVTLPKALLALFAEVKEHR
FIPNITTVNGKEYFYLLELTHLKGEARRFDSLSELLDRFYFGKAERDRVKQQAQDLERFVVNERKKNANKIKKLEKTLEY
SENAKEFQLYGELLTANLYMLKKGDKQAEVINYYDEESPTITIPLNPNKTPSENAQAYFTKYQKAKNSVAVVEEQIRLAQ
EEIEYFDQLIQQLSSASPRDISEIREELVEGKYLRPKQQKGQKKQKPHNPVLETYESTSGLTILVGKNNRQNEYLTTRVA
ARDDIWLHTKDIPGSHVVIRSSEPDEQTIMEAATIAAYFSKAKDSSSVPVDYTKIRHVKKPNGAKPGFVTYDSQHTVFVT
PDADTVIKLKKS

Specific function: Unknown

COG id: COG1293

COG function: function code K; Predicted RNA-binding protein homologous to eukaryotic snRNP

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDCCAG1 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YLOA_BACSU (O34693)

Other databases:

- EMBL:   AJ000974
- EMBL:   AL009126
- EMBL:   Y13937
- PIR:   G69877
- RefSeq:   NP_389447.1
- ProteinModelPortal:   O34693
- SMR:   O34693
- EnsemblBacteria:   EBBACT00000001634
- GeneID:   936878
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU15640
- NMPDR:   fig|224308.1.peg.1566
- GenoList:   BSU15640
- GeneTree:   EBGT00050000002311
- HOGENOM:   HBG635182
- OMA:   HVKKPNG
- ProtClustDB:   CLSK2518228
- BioCyc:   BSUB:BSU15640-MONOMER
- InterPro:   IPR008532
- InterPro:   IPR008616

Pfam domain/function: PF05670 DUF814; PF05833 FbpA

EC number: NA

Molecular weight: Translated: 65475; Mature: 65475

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHMSFDGMFTYGMTHELNEKIMGGRITKIHQPYKHDVIFHIRAKGKNQKLLLSAHPSYSR
CCCCCCCEEEECCCHHHHHHHCCCEEHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCE
VHITAQAYENPSEPPMFCMLLRKHIEGGFIEKIEQAGLDRIMIFHIKSRNEIGDETVRKL
EEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHH
YVEIMGRHSNIILTDAAENVIIDGLKHLSPSMNSYRTVLPGQDYKLPPAQDKISPLEASE
HHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCH
DDILRHLSFQEGRLDKQIVDHFSGVSPLFAKEAVHRAGLANKVTLPKALLALFAEVKEHR
HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
FIPNITTVNGKEYFYLLELTHLKGEARRFDSLSELLDRFYFGKAERDRVKQQAQDLERFV
CCCCEEEECCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VNERKKNANKIKKLEKTLEYSENAKEFQLYGELLTANLYMLKKGDKQAEVINYYDEESPT
HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEEECCCCCCHHHHHCCCCCCE
ITIPLNPNKTPSENAQAYFTKYQKAKNSVAVVEEQIRLAQEEIEYFDQLIQQLSSASPRD
EEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ISEIREELVEGKYLRPKQQKGQKKQKPHNPVLETYESTSGLTILVGKNNRQNEYLTTRVA
HHHHHHHHHCCCCCCCHHHCCHHHCCCCCCHHHHHCCCCCEEEEEECCCCCCCCEEEEEE
ARDDIWLHTKDIPGSHVVIRSSEPDEQTIMEAATIAAYFSKAKDSSSVPVDYTKIRHVKK
CCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCC
PNGAKPGFVTYDSQHTVFVTPDADTVIKLKKS
CCCCCCCEEEECCCEEEEEECCCCEEEEEECC
>Mature Secondary Structure
MHMSFDGMFTYGMTHELNEKIMGGRITKIHQPYKHDVIFHIRAKGKNQKLLLSAHPSYSR
CCCCCCCEEEECCCHHHHHHHCCCEEHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCE
VHITAQAYENPSEPPMFCMLLRKHIEGGFIEKIEQAGLDRIMIFHIKSRNEIGDETVRKL
EEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHH
YVEIMGRHSNIILTDAAENVIIDGLKHLSPSMNSYRTVLPGQDYKLPPAQDKISPLEASE
HHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCH
DDILRHLSFQEGRLDKQIVDHFSGVSPLFAKEAVHRAGLANKVTLPKALLALFAEVKEHR
HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
FIPNITTVNGKEYFYLLELTHLKGEARRFDSLSELLDRFYFGKAERDRVKQQAQDLERFV
CCCCEEEECCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VNERKKNANKIKKLEKTLEYSENAKEFQLYGELLTANLYMLKKGDKQAEVINYYDEESPT
HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEEECCCCCCHHHHHCCCCCCE
ITIPLNPNKTPSENAQAYFTKYQKAKNSVAVVEEQIRLAQEEIEYFDQLIQQLSSASPRD
EEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ISEIREELVEGKYLRPKQQKGQKKQKPHNPVLETYESTSGLTILVGKNNRQNEYLTTRVA
HHHHHHHHHCCCCCCCHHHCCHHHCCCCCCHHHHHCCCCCEEEEEECCCCCCCCEEEEEE
ARDDIWLHTKDIPGSHVVIRSSEPDEQTIMEAATIAAYFSKAKDSSSVPVDYTKIRHVKK
CCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCC
PNGAKPGFVTYDSQHTVFVTPDADTVIKLKKS
CCCCCCCEEEECCCEEEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9534248