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The map label for this gene is ylmH

Identifier: 16078605

GI number: 16078605

Start: 1611654

End: 1612427

Strand: Direct

Name: ylmH

Synonym: BSU15410

Alternate gene names: 16078605

Gene position: 1611654-1612427 (Clockwise)

Preceding gene: 16078604

Following gene: 16078606

Centisome position: 38.23

GC content: 47.67

Gene sequence:

>774_bases
ATGAGCGATATATATCAGCACTTCAGAAAAGACGAGCGGGCCTTTATTGATCAAGCGCTCGAATGGAAAAGAATTGTCCA
GGAGCAGTACCGGATGAAGCTGACCGACTTTTTAGATCCCCGAGAGCAGGTCATCCTCTCTGCTGTTACGGGACAGGCAG
ATGTCGGGCTTGCCTTTTCCGGCGGCTATGACAGAGCGGAGCGGAAACGGGCGATTCTGTTTCCAGAGTACATTACTCCG
GAAGAATCAGATTTTGAACTGCAGGCGTTTAACGTCCGTTATGCTGACAAGTTTGTCTCAGTAGATCATCGTTCTCTGCT
TGGTGCATTAATGGGCATAGGATTAAAGCGGCAAAAATTCGGTGACATCGTGTTTTCTGAGACAGCAGTGCAATTGATTG
TCTCAGCCGATACCGCTGATTTTGTGGCTGCACAGCTGACCCAAGCAGGCAAAGCGGCGGTCAGCCTAGAGAAAATCGAC
TTGTCAGACCTTAACATTCCAGCAGTTGATGTCGAAATAAGAGATGACACGGTTTCTTCTTTAAGGCTTGACGCCGTCTG
CGCCTCTATGAGCAGGCAATCCCGCCAGAAATCACAGACGCTTGTGAAAAACGGCCTTGTGAAAGTGAACTGGAAGGTGG
TTGAAGATCCTTCATACATAGTCGCGGAAGGGGACATGCTGTCTATCAGAGGTTTTGGCCGGTGCAGCTTAACAAAAATC
GAAGGAAAAACCAAAAAAGACAAATGGAGAGTTACGTTTGAACGACAAAAATAG

Upstream 100 bases:

>100_bases
AACCGGCTTGTGGGGACTTTATCGCATGATTGCGTTTTAATGTGACAGTTTGATAGGGGCTTGGCAGCAGCCAAGCCTCT
TTACATAGAAGGGAAAGACG

Downstream 100 bases:

>100_bases
TCGGTTTTTCAGTTTTTTTCTCCATCTGTGCGAAATTTGTTTTATAATGTGAACTAGATAACCGTACTGAAATGTAAAAA
TGGAGGTGGCATCATGCCAT

Product: factor involved in shape determination, RNA-binding fold

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSDIYQHFRKDERAFIDQALEWKRIVQEQYRMKLTDFLDPREQVILSAVTGQADVGLAFSGGYDRAERKRAILFPEYITP
EESDFELQAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVFSETAVQLIVSADTADFVAAQLTQAGKAAVSLEKID
LSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKI
EGKTKKDKWRVTFERQK

Sequences:

>Translated_257_residues
MSDIYQHFRKDERAFIDQALEWKRIVQEQYRMKLTDFLDPREQVILSAVTGQADVGLAFSGGYDRAERKRAILFPEYITP
EESDFELQAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVFSETAVQLIVSADTADFVAAQLTQAGKAAVSLEKID
LSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKI
EGKTKKDKWRVTFERQK
>Mature_256_residues
SDIYQHFRKDERAFIDQALEWKRIVQEQYRMKLTDFLDPREQVILSAVTGQADVGLAFSGGYDRAERKRAILFPEYITPE
ESDFELQAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVFSETAVQLIVSADTADFVAAQLTQAGKAAVSLEKIDL
SDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIE
GKTKKDKWRVTFERQK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YLMH_BACSU (P71020)

Other databases:

- EMBL:   U60901
- EMBL:   AL009126
- PIR:   H69876
- RefSeq:   NP_389424.1
- ProteinModelPortal:   P71020
- EnsemblBacteria:   EBBACT00000003893
- GeneID:   940118
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU15410
- NMPDR:   fig|224308.1.peg.1543
- GenoList:   BSU15410
- GeneTree:   EBGT00050000001507
- HOGENOM:   HBG514900
- OMA:   FLDPREQ
- ProtClustDB:   CLSK887276
- BioCyc:   BSUB:BSU15410-MONOMER
- InterPro:   IPR002942
- SMART:   SM00363

Pfam domain/function: PF01479 S4

EC number: NA

Molecular weight: Translated: 29067; Mature: 28935

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIYQHFRKDERAFIDQALEWKRIVQEQYRMKLTDFLDPREQVILSAVTGQADVGLAFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEE
GGYDRAERKRAILFPEYITPEESDFELQAFNVRYADKFVSVDHRSLLGALMGIGLKRQKF
CCCCHHHCCEEEECCCCCCCCCCCCEEEEEEEEEHHHHHCCHHHHHHHHHHCCCCCHHHH
GDIVFSETAVQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSS
CCCCCCHHEEEEEEECCCHHHHHHHHHHCCHHEEEEEEECCCCCCCCEEEEEECCCCHHH
LRLDAVCASMSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKI
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCEEEECCCEEEECCCCCEEEEEE
EGKTKKDKWRVTFERQK
CCCCCCCEEEEEEECCC
>Mature Secondary Structure 
SDIYQHFRKDERAFIDQALEWKRIVQEQYRMKLTDFLDPREQVILSAVTGQADVGLAFS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEE
GGYDRAERKRAILFPEYITPEESDFELQAFNVRYADKFVSVDHRSLLGALMGIGLKRQKF
CCCCHHHCCEEEECCCCCCCCCCCCEEEEEEEEEHHHHHCCHHHHHHHHHHCCCCCHHHH
GDIVFSETAVQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSS
CCCCCCHHEEEEEEECCCHHHHHHHHHHCCHHEEEEEEECCCCCCCCEEEEEECCCCHHH
LRLDAVCASMSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKI
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCEEEECCCEEEECCCCCEEEEEE
EGKTKKDKWRVTFERQK
CCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377