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The map label for this gene is ylaC

Identifier: 16078537

GI number: 16078537

Start: 1544085

End: 1544606

Strand: Direct

Name: ylaC

Synonym: BSU14730

Alternate gene names: 16078537

Gene position: 1544085-1544606 (Clockwise)

Preceding gene: 16078536

Following gene: 16078538

Centisome position: 36.63

GC content: 41.0

Gene sequence:

>522_bases
ATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCA
TCATCTTGAAACAGCCAAGGACTTAGCGCAGGACACGTTTGTAAAAGCTCTTAACGGTCTGGCTTCGTTTAGGGGGCATT
CTTCCATCAGAACATGGCTCTACACCATTGCGCATCATACCTTTATCAATTGGTACCGAAGGGATGTCAAATACCAATTT
ACTGAAATCAGCAAAAATGAAGGGTTAACGCAAACAACTTATGACCAGCCTGAACAGTATCTGTCACGGACGGTGAAAAG
CGAAACACTGCGGCAGGAGCTCCTGAAGTTAAAAGATCAGCATCAATCCGTTTTGATTTTAAGAGAATTCCAAGAGCTTT
CTTATGAAGAAATCGCTGAGATATTAGGATGGAGTCTTTCTAAGGTGAATACCACATTGCACCGGGCTAGATTAGAGCTA
AAGAAAAACATGACGAAAAGTAGAGAGGAGGAGCGGATATGA

Upstream 100 bases:

>100_bases
AAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTCATTTTATTGGCCATTTGGATG
ACGGTGTGGTTTTATTTTTA

Downstream 100 bases:

>100_bases
CCTGCTTTCTAGTAAGAGACCTGCTTCCTCTGTATCTTGAAGGTGATTGTAAAAGAGAAACGGAACACGTTATAGAAGAG
CATTTAAAAATGTGCAGCAG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MKHRDSIEDLYRQYYQEILNYLFRRTHHLETAKDLAQDTFVKALNGLASFRGHSSIRTWLYTIAHHTFINWYRRDVKYQF
TEISKNEGLTQTTYDQPEQYLSRTVKSETLRQELLKLKDQHQSVLILREFQELSYEEIAEILGWSLSKVNTTLHRARLEL
KKNMTKSREEERI

Sequences:

>Translated_173_residues
MKHRDSIEDLYRQYYQEILNYLFRRTHHLETAKDLAQDTFVKALNGLASFRGHSSIRTWLYTIAHHTFINWYRRDVKYQF
TEISKNEGLTQTTYDQPEQYLSRTVKSETLRQELLKLKDQHQSVLILREFQELSYEEIAEILGWSLSKVNTTLHRARLEL
KKNMTKSREEERI
>Mature_173_residues
MKHRDSIEDLYRQYYQEILNYLFRRTHHLETAKDLAQDTFVKALNGLASFRGHSSIRTWLYTIAHHTFINWYRRDVKYQF
TEISKNEGLTQTTYDQPEQYLSRTVKSETLRQELLKLKDQHQSVLILREFQELSYEEIAEILGWSLSKVNTTLHRARLEL
KKNMTKSREEERI

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor contributes to oxidative stress resistance

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): YLAC_BACSU (O07627)

Other databases:

- EMBL:   Z97025
- EMBL:   AL009126
- PIR:   A69872
- RefSeq:   NP_389356.1
- ProteinModelPortal:   O07627
- SMR:   O07627
- EnsemblBacteria:   EBBACT00000002548
- GeneID:   935973
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU14730
- NMPDR:   fig|224308.1.peg.1475
- GenoList:   BSU14730
- GeneTree:   EBGT00070000031727
- HOGENOM:   HBG753452
- OMA:   HSSIRTW
- ProtClustDB:   CLSK887253
- BioCyc:   BSUB:BSU14730-MONOMER
- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- TIGRFAMs:   TIGR02950
- TIGRFAMs:   TIGR02937

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2; SSF88946 Sigma_r2; SSF88659 Sigma_r3_r4

EC number: NA

Molecular weight: Translated: 20928; Mature: 20928

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHRDSIEDLYRQYYQEILNYLFRRTHHLETAKDLAQDTFVKALNGLASFRGHSSIRTWL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
YTIAHHTFINWYRRDVKYQFTEISKNEGLTQTTYDQPEQYLSRTVKSETLRQELLKLKDQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HQSVLILREFQELSYEEIAEILGWSLSKVNTTLHRARLELKKNMTKSREEERI
HHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKHRDSIEDLYRQYYQEILNYLFRRTHHLETAKDLAQDTFVKALNGLASFRGHSSIRTWL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
YTIAHHTFINWYRRDVKYQFTEISKNEGLTQTTYDQPEQYLSRTVKSETLRQELLKLKDQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HQSVLILREFQELSYEEIAEILGWSLSKVNTTLHRARLELKKNMTKSREEERI
HHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377