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The map label for this gene is ykoM

Identifier: 16078399

GI number: 16078399

Start: 1398496

End: 1398960

Strand: Direct

Name: ykoM

Synonym: BSU13340

Alternate gene names: 16078399

Gene position: 1398496-1398960 (Clockwise)

Preceding gene: 16078398

Following gene: 255767315

Centisome position: 33.17

GC content: 42.58

Gene sequence:

>465_bases
ATGATGAGATTATCGTTTAACGAAGAAGAAGTTGAGCGTGCGATGAATTTGTACAGAGTTTTTGCAAGGGCTTTCAAAAG
TGTGTCCGAACATAGTATCCGTGATAGCAAAGAGCACGGTTTTAATCCCACTGAATTTGCTGTACTGGAACTCCTGTACA
CAAGAGGCCCGCAAAAATTACAGCAAATTGGGTCGAGACTTCTGCTTGTAAGCGGAAACGTCACATATGTTATTGACAAA
CTAGAAAGAAACGGGTTTTTAGTAAGGGAGCAGGACCCGAAAGATAAACGCTCTGTTTACGCACATTTAACTGACAAGGG
AAATGAGTATTTGGATAAAATTTATCCGATTCATGCACTGCGTATTGCGAGAGCGTTTTCAGGTCTTTCGCCTGATGAAC
AGGACCAGCTGATCGTCCTGCTCAAGAAAGCAGGCATACACAGCCAGCATTTGCTGTTTCGTTAA

Upstream 100 bases:

>100_bases
TTCTCGAATTATAGCGAATACGTATAGTAAGGGACTGAACTCTTATTATATGTAAGGGTTTTCATTATTTTTTTATAAAA
ATCCTATATACGAGGTAGAT

Downstream 100 bases:

>100_bases
CTATTCTACACTCTCTATTTCAGGAGAGTGTTTTTTTGTTTCCATATGATTCTTTTTAAAACATCTTTAATCTTCCTATC
AGACATTTCGCCAAGGTATC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MMRLSFNEEEVERAMNLYRVFARAFKSVSEHSIRDSKEHGFNPTEFAVLELLYTRGPQKLQQIGSRLLLVSGNVTYVIDK
LERNGFLVREQDPKDKRSVYAHLTDKGNEYLDKIYPIHALRIARAFSGLSPDEQDQLIVLLKKAGIHSQHLLFR

Sequences:

>Translated_154_residues
MMRLSFNEEEVERAMNLYRVFARAFKSVSEHSIRDSKEHGFNPTEFAVLELLYTRGPQKLQQIGSRLLLVSGNVTYVIDK
LERNGFLVREQDPKDKRSVYAHLTDKGNEYLDKIYPIHALRIARAFSGLSPDEQDQLIVLLKKAGIHSQHLLFR
>Mature_154_residues
MMRLSFNEEEVERAMNLYRVFARAFKSVSEHSIRDSKEHGFNPTEFAVLELLYTRGPQKLQQIGSRLLLVSGNVTYVIDK
LERNGFLVREQDPKDKRSVYAHLTDKGNEYLDKIYPIHALRIARAFSGLSPDEQDQLIVLLKKAGIHSQHLLFR

Specific function: Negative Regulator Of The Multidrug Operon Emrab. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YKOM_BACSU (O34949)

Other databases:

- EMBL:   AJ002571
- EMBL:   AL009126
- PIR:   A69860
- RefSeq:   NP_389217.1
- ProteinModelPortal:   O34949
- SMR:   O34949
- EnsemblBacteria:   EBBACT00000001453
- GeneID:   939824
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU13340
- NMPDR:   fig|224308.1.peg.1336
- GenoList:   BSU13340
- GeneTree:   EBGT00070000031786
- HOGENOM:   HBG728159
- OMA:   IRDSKEH
- PhylomeDB:   O34949
- ProtClustDB:   CLSK887179
- BioCyc:   BSUB:BSU13340-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00598
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 17859; Mature: 17859

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRLSFNEEEVERAMNLYRVFARAFKSVSEHSIRDSKEHGFNPTEFAVLELLYTRGPQKL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCCHHHH
QQIGSRLLLVSGNVTYVIDKLERNGFLVREQDPKDKRSVYAHLTDKGNEYLDKIYPIHAL
HHHCCEEEEEECCEEEEEEECCCCCEEEECCCCCHHHHEEEHHCCCCHHHHHHHHHHHHH
RIARAFSGLSPDEQDQLIVLLKKAGIHSQHLLFR
HHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MMRLSFNEEEVERAMNLYRVFARAFKSVSEHSIRDSKEHGFNPTEFAVLELLYTRGPQKL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCCHHHH
QQIGSRLLLVSGNVTYVIDKLERNGFLVREQDPKDKRSVYAHLTDKGNEYLDKIYPIHAL
HHHCCEEEEEECCEEEEEEECCCCCEEEECCCCCHHHHEEEHHCCCCHHHHHHHHHHHHH
RIARAFSGLSPDEQDQLIVLLKKAGIHSQHLLFR
HHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377