Click here to switch to the map view.

The map label for this gene is xkdD

Identifier: 16078319

GI number: 16078319

Start: 1323802

End: 1324152

Strand: Direct

Name: xkdD

Synonym: BSU12540

Alternate gene names: 16078319

Gene position: 1323802-1324152 (Clockwise)

Preceding gene: 255767285

Following gene: 16078320

Centisome position: 31.4

GC content: 45.58

Gene sequence:

>351_bases
GTGAAAGTGTTGGCAAAGACAAAACAGGCAGAGAAAAGCCCTGCGCCGTGGCGTGCTGTCCCGTGCGGGGATACGAAACC
GATCTATATTTATTCAGCTTACAGTGAAGAAGAAAAAGAAAGATTTCCGTACTCAAACGGGCGGCTGATTGCAGCTGTAT
TTGACCTCAGCTCTTATTCGCAAAAAAGCAATGCCTCTTTGATGGCCGCTGCGCCTGAATTGCTGGAAGCGTCTAAAGCA
GCACTTGATTTTCTGAAAGGGAATTCTATTCATTCAAAGGAGCGTATCATTCAGCTATTAGAAAAAGCTGAAGCAAGCGC
TGCACCGAAAAGGGGAGGAAATAAAACATGA

Upstream 100 bases:

>100_bases
GAATATCTATGATTAAACAGCTGACTGCTCTAATCGCTTTGCTGTTTCGGGCAAAGCGAACAGAAAAAAACATTGAACAA
TGGTATAAGGACGACGGGAA

Downstream 100 bases:

>100_bases
TTCATCCGAAAAAACTGCTGCATATCGATTCCGTCACGCTTAAGAGCCAGCTGGAGGACGGGAAAATCCGTGTCATTATT
GTGGACGGCATCAAGCAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MKVLAKTKQAEKSPAPWRAVPCGDTKPIYIYSAYSEEEKERFPYSNGRLIAAVFDLSSYSQKSNASLMAAAPELLEASKA
ALDFLKGNSIHSKERIIQLLEKAEASAAPKRGGNKT

Sequences:

>Translated_116_residues
MKVLAKTKQAEKSPAPWRAVPCGDTKPIYIYSAYSEEEKERFPYSNGRLIAAVFDLSSYSQKSNASLMAAAPELLEASKA
ALDFLKGNSIHSKERIIQLLEKAEASAAPKRGGNKT
>Mature_116_residues
MKVLAKTKQAEKSPAPWRAVPCGDTKPIYIYSAYSEEEKERFPYSNGRLIAAVFDLSSYSQKSNASLMAAAPELLEASKA
ALDFLKGNSIHSKERIIQLLEKAEASAAPKRGGNKT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XKDD_BACSU (P39783)

Other databases:

- EMBL:   Z34287
- EMBL:   Z70177
- EMBL:   AL009126
- PIR:   I40412
- RefSeq:   NP_389136.1
- EnsemblBacteria:   EBBACT00000003883
- GeneID:   936466
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12540
- NMPDR:   fig|224308.1.peg.1255
- GenoList:   BSU12540
- GeneTree:   EBGT00050000002494
- HOGENOM:   HBG337931
- OMA:   YIYSAYS
- ProtClustDB:   CLSK887119
- BioCyc:   BSUB:BSU12540-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12677; Mature: 12677

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLAKTKQAEKSPAPWRAVPCGDTKPIYIYSAYSEEEKERFPYSNGRLIAAVFDLSSYS
CCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCHHHHHCCCCCCEEEEEEECCHHCC
QKSNASLMAAAPELLEASKAALDFLKGNSIHSKERIIQLLEKAEASAAPKRGGNKT
CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKVLAKTKQAEKSPAPWRAVPCGDTKPIYIYSAYSEEEKERFPYSNGRLIAAVFDLSSYS
CCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCHHHHHCCCCCCEEEEEEECCHHCC
QKSNASLMAAAPELLEASKAALDFLKGNSIHSKERIIQLLEKAEASAAPKRGGNKT
CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083174; 9384377