| Definition | Bacillus subtilis subsp. subtilis str. 168 chromosome, complete genome. |
|---|---|
| Accession | NC_000964 |
| Length | 4,215,606 |
Click here to switch to the map view.
The map label for this gene is xlyB
Identifier: 16078311
GI number: 16078311
Start: 1317535
End: 1318488
Strand: Direct
Name: xlyB
Synonym: BSU12460
Alternate gene names: 16078311
Gene position: 1317535-1318488 (Clockwise)
Preceding gene: 16078309
Following gene: 16078313
Centisome position: 31.25
GC content: 49.27
Gene sequence:
>954_bases GTGAGCATTCCAGTAAAGAAAAATTTGGTTTCTGAGGCGAAATACGCGTTGAAGTGTCCTAATGCAATGTCCGCTGAATA CATTACCATTCACAACACGGCAAACGATGCATCAGCGGCCAATGAAATCAGCTATATGATCGGGAACACAAGCTCGACAA GCTTTCATTTTGCGGTCGATGATCAAGAGGTGATTCAAGGTCTGCCGCTTAACCGAAACGCTTGGCACACTGGTGACGGC ACAAACGGTCCGGGAAACCGCAAATCAATCGGTGTTGAGATTTGCTACAGCAAATCGGGAGGCCCGAAGTATGAGGCAGC TGAAGCCTTGGCGATTTCATTTGTTGCACAGCTGTTGAAGGAGCGCGGCTGGGGCATCGATCGGGTGAGAAAGCATCAGG ACTGGAGCGGAAAGTATTGCCCGCACCGCATTTTATCAGAGGGGCGCTGGGATCAAGTGAAGGCGGCGATTGAAAAGGAA TTAAACGGGGGCGTATCAGCGAAAAAAGCTGCAGTCTCTTCTTCGGCGTCTGAATATCATGTAAAAAAAGGTGACACACT GTCAGGGATTGCCGCATCACACGGGGCCAGTGTGAAAACGCTGCAAAGCATAAATCATATCACTGACCCGAACCACATCA AAATCGGACAGGTGATCAAACTGCCTCAGACGGCATCTGCTTCTAAAAGCCATGCCGCATCCTCATATCCGCTCCCATCC GGCGTGATCAAAGTGACAAGCCCGCTGACGCAAGGGACAAAAGTAAAGCAGGTGCAGACTGCTTTAGCCGCTCTTTATTT TTATCCTGATAAAGGAGCGAAAAATCACGGCGTTGACGGCGTTTATGGCCCGAAAACAGCTAATGCAGTGAAACGTTTTC AGTCTGTCAGCGGTTTAACGGCTGATGGGATTTACGGTCCGAAAACGAAAGCGAAGATGGAGGAAAAGCTGTAA
Upstream 100 bases:
>100_bases TCAGTTTAACACATTTATCCATATTACGGTGATAGATGATATGAGCTTTTCGTCCTACGAATGCCACCTATTTATGAAAA AAGAAAAGGAGAGATGATAG
Downstream 100 bases:
>100_bases ATGAAAAGACGGAAGCTGTGAAGCTTCCGTCTTTTCGCCTTACATACAAACTGCGGCAAGCACCTTTTGAATATCATAAA TGCTTTCATCTTTTTTAAAC
Product: N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: Autolysin; Cell wall hydrolase
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MSIPVKKNLVSEAKYALKCPNAMSAEYITIHNTANDASAANEISYMIGNTSSTSFHFAVDDQEVIQGLPLNRNAWHTGDG TNGPGNRKSIGVEICYSKSGGPKYEAAEALAISFVAQLLKERGWGIDRVRKHQDWSGKYCPHRILSEGRWDQVKAAIEKE LNGGVSAKKAAVSSSASEYHVKKGDTLSGIAASHGASVKTLQSINHITDPNHIKIGQVIKLPQTASASKSHAASSYPLPS GVIKVTSPLTQGTKVKQVQTALAALYFYPDKGAKNHGVDGVYGPKTANAVKRFQSVSGLTADGIYGPKTKAKMEEKL
Sequences:
>Translated_317_residues MSIPVKKNLVSEAKYALKCPNAMSAEYITIHNTANDASAANEISYMIGNTSSTSFHFAVDDQEVIQGLPLNRNAWHTGDG TNGPGNRKSIGVEICYSKSGGPKYEAAEALAISFVAQLLKERGWGIDRVRKHQDWSGKYCPHRILSEGRWDQVKAAIEKE LNGGVSAKKAAVSSSASEYHVKKGDTLSGIAASHGASVKTLQSINHITDPNHIKIGQVIKLPQTASASKSHAASSYPLPS GVIKVTSPLTQGTKVKQVQTALAALYFYPDKGAKNHGVDGVYGPKTANAVKRFQSVSGLTADGIYGPKTKAKMEEKL >Mature_316_residues SIPVKKNLVSEAKYALKCPNAMSAEYITIHNTANDASAANEISYMIGNTSSTSFHFAVDDQEVIQGLPLNRNAWHTGDGT NGPGNRKSIGVEICYSKSGGPKYEAAEALAISFVAQLLKERGWGIDRVRKHQDWSGKYCPHRILSEGRWDQVKAAIEKEL NGGVSAKKAAVSSSASEYHVKKGDTLSGIAASHGASVKTLQSINHITDPNHIKIGQVIKLPQTASASKSHAASSYPLPSG VIKVTSPLTQGTKVKQVQTALAALYFYPDKGAKNHGVDGVYGPKTANAVKRFQSVSGLTADGIYGPKTKAKMEEKL
Specific function: Autolysins are involved in some important biological processes such as cell separation, cell-wall turnover, competence for genetic transformation, formation of the flagella and sporulation
COG id: COG5632
COG function: function code M; N-acetylmuramoyl-L-alanine amidase
Gene ontology:
Cell location: Secreted (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 LysM repeat
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): XLYB_BACSU (O34391)
Other databases:
- EMBL: AF034138 - EMBL: AL009126 - PIR: B69734 - RefSeq: NP_389128.1 - ProteinModelPortal: O34391 - EnsemblBacteria: EBBACT00000002050 - GeneID: 936464 - GenomeReviews: AL009126_GR - KEGG: bsu:BSU12460 - NMPDR: fig|224308.1.peg.1247 - GenoList: BSU12460 - GeneTree: EBGT00050000000162 - HOGENOM: HBG712727 - OMA: QSINHIT - ProtClustDB: CLSK887114 - BioCyc: BSUB:BSU12460-MONOMER - BRENDA: 3.5.1.28 - InterPro: IPR002502 - InterPro: IPR002477 - InterPro: IPR018392 - InterPro: IPR002482 - Gene3D: G3DSA:3.40.80.10 - Gene3D: G3DSA:1.10.101.10 - SMART: SM00644 - SMART: SM00257
Pfam domain/function: PF01510 Amidase_2; PF01476 LysM; PF01471 PG_binding_1; SSF55846 Amidase_2; SSF47090 PGBD_like
EC number: =3.5.1.28
Molecular weight: Translated: 33864; Mature: 33732
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPVKKNLVSEAKYALKCPNAMSAEYITIHNTANDASAANEISYMIGNTSSTSFHFAVD CCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHEEEEECCCCCCEEEEEEC DQEVIQGLPLNRNAWHTGDGTNGPGNRKSIGVEICYSKSGGPKYEAAEALAISFVAQLLK HHHHHCCCCCCCCCEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH ERGWGIDRVRKHQDWSGKYCPHRILSEGRWDQVKAAIEKELNGGVSAKKAAVSSSASEYH HCCCCHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEE VKKGDTLSGIAASHGASVKTLQSINHITDPNHIKIGQVIKLPQTASASKSHAASSYPLPS ECCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCEEECCEEECCCCCCCCHHHCCCCCCCCC GVIKVTSPLTQGTKVKQVQTALAALYFYPDKGAKNHGVDGVYGPKTANAVKRFQSVSGLT CCEEECCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC ADGIYGPKTKAKMEEKL CCCCCCCCHHHHHHHCC >Mature Secondary Structure SIPVKKNLVSEAKYALKCPNAMSAEYITIHNTANDASAANEISYMIGNTSSTSFHFAVD CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHEEEEECCCCCCEEEEEEC DQEVIQGLPLNRNAWHTGDGTNGPGNRKSIGVEICYSKSGGPKYEAAEALAISFVAQLLK HHHHHCCCCCCCCCEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH ERGWGIDRVRKHQDWSGKYCPHRILSEGRWDQVKAAIEKELNGGVSAKKAAVSSSASEYH HCCCCHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEE VKKGDTLSGIAASHGASVKTLQSINHITDPNHIKIGQVIKLPQTASASKSHAASSYPLPS ECCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCEEECCEEECCCCCCCCHHHCCCCCCCCC GVIKVTSPLTQGTKVKQVQTALAALYFYPDKGAKNHGVDGVYGPKTANAVKRFQSVSGLT CCEEECCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC ADGIYGPKTKAKMEEKL CCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377