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The map label for this gene is yjkA

Identifier: 16078289

GI number: 16078289

Start: 1294996

End: 1295748

Strand: Reverse

Name: yjkA

Synonym: BSU12240

Alternate gene names: 16078289

Gene position: 1295748-1294996 (Counterclockwise)

Preceding gene: 16078290

Following gene: 255767277

Centisome position: 30.74

GC content: 46.88

Gene sequence:

>753_bases
ATGGATTACCTTTCTCTCTCTTTAACGATGATCTTTGTTTTGATCGCCTTGTTTTTATCAAAATCCTTTAAAGCCGGTGT
AGAAAAAGACATGATCATCGCCACCATCCGGGCCGCGGTGCAGCTGCTTATCATCGGTTATGTTTTGTCGCTGATTTTTC
GCGGAGACCACCCTGTTTTTATCCTGCTGATGGTGCTGTTAATGCTCGCGGTGGCGGCGCAAAATGTCATCAAGCGAAAG
AAAAATACTATCGGTTCGTTTTGGAGGGTGTTTGCCGCGTTAGCAATCGTAGAAATTGTGACGCAGGGAATTCTGCTGTC
TCTTCATATCATTCCGCTTACGGCACGATATGTCATTCCGATCAGCGGGATGGTCATCGGAAATTCGATGGTGCTCTCAA
GTTTGTTTCTAAACCGGCTTAACTCAGAAGTCGGCGTTCGCAAAGAAGAAATTCAATTAATATTGTCACTTGGCGGCACA
CCGAAGCAATCCATACAGCGCATTCTTACCTCAGCGATGAAAATGAGTATGATCCCGACGCTCGAAAGCCAGAAAACACT
GGGTCTTGTCCAGCTTCCCGGCATGATGACTGGCCAGATTCTAGCCGGCGCGGACCCGATTCAGGCAGTACGCTTTCAAC
TCTTAATCGTGTTTACAACGATGGCCTCAGCCGCGCTGACTTGTGTAATCTTAAGCGTGCTGACATACCCATCATTATTC
ACCGTTCATCAGCAGCTGAAGCAAAATGAATGA

Upstream 100 bases:

>100_bases
TGGCAGATGGCCGGCTGCTTGAAATCGCTGAAACCGACACATTTTTCTCCGCTCCGCAGCATGAAGCAGCGAAAGAATTT
TTGAAGGGAGGCACTCGGTA

Downstream 100 bases:

>100_bases
CAGACAAAAGCCGCTTTCCGAGGGAAAAGCGGCTTTTTGTACTTGTTATTCCTTTTCTTCATAATACTTGGCCAGCTCAA
CAATCATCGCACCCATCCGC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MDYLSLSLTMIFVLIALFLSKSFKAGVEKDMIIATIRAAVQLLIIGYVLSLIFRGDHPVFILLMVLLMLAVAAQNVIKRK
KNTIGSFWRVFAALAIVEIVTQGILLSLHIIPLTARYVIPISGMVIGNSMVLSSLFLNRLNSEVGVRKEEIQLILSLGGT
PKQSIQRILTSAMKMSMIPTLESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVFTTMASAALTCVILSVLTYPSLF
TVHQQLKQNE

Sequences:

>Translated_250_residues
MDYLSLSLTMIFVLIALFLSKSFKAGVEKDMIIATIRAAVQLLIIGYVLSLIFRGDHPVFILLMVLLMLAVAAQNVIKRK
KNTIGSFWRVFAALAIVEIVTQGILLSLHIIPLTARYVIPISGMVIGNSMVLSSLFLNRLNSEVGVRKEEIQLILSLGGT
PKQSIQRILTSAMKMSMIPTLESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVFTTMASAALTCVILSVLTYPSLF
TVHQQLKQNE
>Mature_250_residues
MDYLSLSLTMIFVLIALFLSKSFKAGVEKDMIIATIRAAVQLLIIGYVLSLIFRGDHPVFILLMVLLMLAVAAQNVIKRK
KNTIGSFWRVFAALAIVEIVTQGILLSLHIIPLTARYVIPISGMVIGNSMVLSSLFLNRLNSEVGVRKEEIQLILSLGGT
PKQSIQRILTSAMKMSMIPTLESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVFTTMASAALTCVILSVLTYPSLF
TVHQQLKQNE

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family

Homologues:

Organism=Escherichia coli, GI87081746, Length=245, Percent_Identity=39.1836734693878, Blast_Score=174, Evalue=6e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJKA_BACSU (O34684)

Other databases:

- EMBL:   AF015825
- EMBL:   AL009126
- PIR:   E69851
- RefSeq:   NP_389106.1
- ProteinModelPortal:   O34684
- EnsemblBacteria:   EBBACT00000001879
- GeneID:   936453
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12240
- NMPDR:   fig|224308.1.peg.1225
- GenoList:   BSU12240
- GeneTree:   EBGT00050000002403
- HOGENOM:   HBG539152
- OMA:   VQLPGMM
- PhylomeDB:   O34684
- ProtClustDB:   CLSK2518222
- BioCyc:   BSUB:BSU12240-MONOMER
- InterPro:   IPR005226
- TIGRFAMs:   TIGR00245

Pfam domain/function: PF03649 UPF0014

EC number: NA

Molecular weight: Translated: 27415; Mature: 27415

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd762ae4)-; HASH(0xd186edc)-; HASH(0xce71d98)-; HASH(0xe6a060c)-; HASH(0xe7706bc)-; HASH(0xd1a2bb8)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCH
>Mature Secondary Structure
MDYLSLSLTMIFVLIALFLSKSFKAGVEKDMIIATIRAAVQLLIIGYVLSLIFRGDHPVF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ILLMVLLMLAVAAQNVIKRKKNTIGSFWRVFAALAIVEIVTQGILLSLHIIPLTARYVIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
ISGMVIGNSMVLSSLFLNRLNSEVGVRKEEIQLILSLGGTPKQSIQRILTSAMKMSMIPT
ECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
LESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVFTTMASAALTCVILSVLTYPSLF
CCCCCCCCCEECCCCHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVHQQLKQNE
HHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377