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The map label for this gene is yjhA

Identifier: 16078283

GI number: 16078283

Start: 1289298

End: 1289939

Strand: Direct

Name: yjhA

Synonym: BSU12180

Alternate gene names: 16078283

Gene position: 1289298-1289939 (Clockwise)

Preceding gene: 16078282

Following gene: 255767276

Centisome position: 30.58

GC content: 36.6

Gene sequence:

>642_bases
ATGAAAAAAGTCTTATTACTATTATTTGTCTTGACGATCGGGTTAGCGCTTTCTGCGTGCAGCCAATCGAGCGATGCGTC
AGAGAAGGAAAAACCGAAAGAGAAAAAATCGCAAGAAGAGCTTGAAAAGGAACTTGATAAGGAATTGAAAAAAGGCGGTG
AGCCGAAGACCAAAAAAGATGATCAAATACATAAAATAGGAGAAACATTTAAAGCAGGACATACGAATTTTACAGTGAAT
AAAGTTGATAGAGTGCAAAAAGGTGAATATATGAATGTTGGCGGAGCTGTAAATGAGGAGACAAAAACAATAAAAGATGA
TGAGGAACGGCTTATTATAGAAGTTACGATGGAAAATATAGGGGAAGATTCAATAAGCTACAATTTTATCGGGTTTGATT
TAAGAGATAAGAATGATCAATCAGTGCGGCCTGTTTTTTCTATAGAAGAGAAGGGCAGAATCCTTATGGGAGGAACACTA
GTATCGGGGAAAAAGGTTACAGGTGTACTCAGTTATGTCATCCCTAAAGGAGAACAGAAACATTACACACTGGTATATAA
TCCGTTTTTAGCTGATACAAATAGCAGTAATACAGAAGAGAGAGTAAAGGACGATATTGATTACTTGGTGAAGTTAGATT
AG

Upstream 100 bases:

>100_bases
GTGATGAATGAGATAGAAATAATCGTTACTTTCTTACCTGTTAAGAAAAGGGAAAATCTGATTATAATAGAAATCGATTA
CTTTAGATGGGGGAACAATC

Downstream 100 bases:

>100_bases
ATGCTAATTTACAGTTGCACGTTTTTCATCTGTGGAAAACGTGCATTTTTTATAGCGAAACTTGACTTGAAAGGATGAGT
GATAAAAGTGCAAACCAAAT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKKVLLLLFVLTIGLALSACSQSSDASEKEKPKEKKSQEELEKELDKELKKGGEPKTKKDDQIHKIGETFKAGHTNFTVN
KVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTL
VSGKKVTGVLSYVIPKGEQKHYTLVYNPFLADTNSSNTEERVKDDIDYLVKLD

Sequences:

>Translated_213_residues
MKKVLLLLFVLTIGLALSACSQSSDASEKEKPKEKKSQEELEKELDKELKKGGEPKTKKDDQIHKIGETFKAGHTNFTVN
KVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTL
VSGKKVTGVLSYVIPKGEQKHYTLVYNPFLADTNSSNTEERVKDDIDYLVKLD
>Mature_213_residues
MKKVLLLLFVLTIGLALSACSQSSDASEKEKPKEKKSQEELEKELDKELKKGGEPKTKKDDQIHKIGETFKAGHTNFTVN
KVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTL
VSGKKVTGVLSYVIPKGEQKHYTLVYNPFLADTNSSNTEERVKDDIDYLVKLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJHA_BACSU (O34725)

Other databases:

- EMBL:   AF015825
- EMBL:   AL009126
- PIR:   G69850
- RefSeq:   NP_389100.1
- PDB:   3CFU
- PDBsum:   3CFU
- ProteinModelPortal:   O34725
- SMR:   O34725
- EnsemblBacteria:   EBBACT00000003030
- GeneID:   936457
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12180
- NMPDR:   fig|224308.1.peg.1219
- GenoList:   BSU12180
- ProtClustDB:   CLSK2752377
- BioCyc:   BSUB:BSU12180-MONOMER
- InterPro:   IPR015250
- InterPro:   IPR021652
- Gene3D:   G3DSA:2.60.40.1240

Pfam domain/function: PF11611 TRF2

EC number: NA

Molecular weight: Translated: 23979; Mature: 23979

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLLLLFVLTIGLALSACSQSSDASEKEKPKEKKSQEELEKELDKELKKGGEPKTKKD
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DQIHKIGETFKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENI
HHHHHHHHHHHCCCCCEEHHHHHHHCCCCEEECCCCCCCCHHCCCCCCCEEEEEEEECCC
GEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTLVSGKKVTGVLSYVIPKGEQK
CCCCCEEEEEEEEECCCCCCCCCCEEEECCCCEEEECCEEECCCHHHHHHHHHCCCCCCC
HYTLVYNPFLADTNSSNTEERVKDDIDYLVKLD
CEEEEEECEECCCCCCCHHHHHHHHHHEEEECC
>Mature Secondary Structure
MKKVLLLLFVLTIGLALSACSQSSDASEKEKPKEKKSQEELEKELDKELKKGGEPKTKKD
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DQIHKIGETFKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENI
HHHHHHHHHHHCCCCCEEHHHHHHHCCCCEEECCCCCCCCHHCCCCCCCEEEEEEEECCC
GEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTLVSGKKVTGVLSYVIPKGEQK
CCCCCEEEEEEEEECCCCCCCCCCEEEECCCCEEEECCEEECCCHHHHHHHHHCCCCCCC
HYTLVYNPFLADTNSSNTEERVKDDIDYLVKLD
CEEEEEECEECCCCCCCHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377