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The map label for this gene is yjcG

Identifier: 16078250

GI number: 16078250

Start: 1256862

End: 1257377

Strand: Reverse

Name: yjcG

Synonym: BSU11850

Alternate gene names: 16078250

Gene position: 1257377-1256862 (Counterclockwise)

Preceding gene: 16078251

Following gene: 16078249

Centisome position: 29.83

GC content: 43.6

Gene sequence:

>516_bases
ATGAAATACGGAATCGTTTTATTTCCATCAAAAAAGCTCCAAGACCTTGCAAACTCTTACAGAAAGCGCTATGACCCAAG
CTACTCTCTAATCCCGCCTCATTTGACGCTGAGAGCATCCTTTGAATGCGCGGAGGAGAAAGCGGATCAGCTCGTATCAC
ATTTAAGAAACATCGCAAAAGAGTCCCACCCACTCGTTCTCAAAATGACAAAATACAGCTCATTTGCGCCTGTCAATAAT
GTCATTTACATCAAAGCAGAACCGACGGAAGAGTTAAAAACACTCAATGAAAAGCTATACACCGGTGTGTTGGCAGGAGA
ACAGGAATATAATTTCGTTCCGCATGTGACGGTCGGCCAAAATCTTTCCGACGATGAGCATTCAGATGTGCTGGGACAAT
TAAAAATGCAGGAAGTGTCGCATGAAGAAATCGTTGACCGTTTCCACTTGCTCTACCAGTTGGAAAACGGATCGTGGACA
GTATATGAAACCTTCTTGCTAGGCAGAGGAGAATAA

Upstream 100 bases:

>100_bases
CGGAGACCACAAATGGACATACTGGCAGCCGCTCATCACCCCGGCGCTGAAAAAAATGCTTTAACACTCTATCATACTTT
ATTTCCAGGAGGGACATAAT

Downstream 100 bases:

>100_bases
TGTTTGAAAGCAGTTATCGCAAAAAATGAAGAACAACTGAAAGATGCATTCTATGTAAGAGAAGAAGTCTTTGTCAAAGA
ACAAAACGTGCCTGCTGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKYGIVLFPSKKLQDLANSYRKRYDPSYSLIPPHLTLRASFECAEEKADQLVSHLRNIAKESHPLVLKMTKYSSFAPVNN
VIYIKAEPTEELKTLNEKLYTGVLAGEQEYNFVPHVTVGQNLSDDEHSDVLGQLKMQEVSHEEIVDRFHLLYQLENGSWT
VYETFLLGRGE

Sequences:

>Translated_171_residues
MKYGIVLFPSKKLQDLANSYRKRYDPSYSLIPPHLTLRASFECAEEKADQLVSHLRNIAKESHPLVLKMTKYSSFAPVNN
VIYIKAEPTEELKTLNEKLYTGVLAGEQEYNFVPHVTVGQNLSDDEHSDVLGQLKMQEVSHEEIVDRFHLLYQLENGSWT
VYETFLLGRGE
>Mature_171_residues
MKYGIVLFPSKKLQDLANSYRKRYDPSYSLIPPHLTLRASFECAEEKADQLVSHLRNIAKESHPLVLKMTKYSSFAPVNN
VIYIKAEPTEELKTLNEKLYTGVLAGEQEYNFVPHVTVGQNLSDDEHSDVLGQLKMQEVSHEEIVDRFHLLYQLENGSWT
VYETFLLGRGE

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJCG_BACSU (O31629)

Other databases:

- EMBL:   AL009126
- PIR:   G69846
- RefSeq:   NP_389067.1
- PDB:   2D4G
- PDBsum:   2D4G
- ProteinModelPortal:   O31629
- SMR:   O31629
- EnsemblBacteria:   EBBACT00000002439
- GeneID:   939822
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU11850
- NMPDR:   fig|224308.1.peg.1186
- GenoList:   BSU11850
- GeneTree:   EBGT00050000002956
- HOGENOM:   HBG313713
- OMA:   ANSYRKR
- ProtClustDB:   PRK13679
- BioCyc:   BSUB:BSU11850-MONOMER
- GO:   GO:0005622
- HAMAP:   MF_01444
- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932

Pfam domain/function: PF02834 2_5_RNA_ligase; SSF55144 Cyc_nuc_Pdiester

EC number: NA

Molecular weight: Translated: 19662; Mature: 19662

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGIVLFPSKKLQDLANSYRKRYDPSYSLIPPHLTLRASFECAEEKADQLVSHLRNIAK
CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
ESHPLVLKMTKYSSFAPVNNVIYIKAEPTEELKTLNEKLYTGVLAGEQEYNFVPHVTVGQ
CCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
NLSDDEHSDVLGQLKMQEVSHEEIVDRFHLLYQLENGSWTVYETFLLGRGE
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCEEEEEEEEECCCC
>Mature Secondary Structure
MKYGIVLFPSKKLQDLANSYRKRYDPSYSLIPPHLTLRASFECAEEKADQLVSHLRNIAK
CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
ESHPLVLKMTKYSSFAPVNNVIYIKAEPTEELKTLNEKLYTGVLAGEQEYNFVPHVTVGQ
CCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
NLSDDEHSDVLGQLKMQEVSHEEIVDRFHLLYQLENGSWTVYETFLLGRGE
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377