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The map label for this gene is yhfC

Identifier: 16078082

GI number: 16078082

Start: 1093874

End: 1094650

Strand: Direct

Name: yhfC

Synonym: BSU10180

Alternate gene names: 16078082

Gene position: 1093874-1094650 (Clockwise)

Preceding gene: 16078080

Following gene: 16078084

Centisome position: 25.95

GC content: 45.43

Gene sequence:

>777_bases
ATGGTCAGTCAAGAAGCAGTAGTCTTTTTGGCATTATCCGGGGCTATTGCGTTTCTGTTGCCAATCGGGCTGATTGTATG
GTTTAAGCGAAAGTATGGTGCCTCGCTTAAAGTGTTTTTTATTGGCGCTCTCACGTTTTTTGTCTTCGCTCAGCTGCTGG
AAGGCGGCGTTCATGTTTATGTACTGCAAGTGAATGAAATGACGAAAGAAGCGATGCAGCATCCATTATGGTATGGCATT
TACGGCTGCTTGATGGCCGGCATTTTTGAGGAGTGCGGAAGGTATTTGATGATGCGATTTTTTATGAAGCGCCATCATAC
TTGGGCAGATGGTCTGGCTTTCGGGGCAGGCCATGGCGGGCTTGAAGCCATCCTGATTACAGGCTTGTCCTCTATCTCAC
TTATTGTATACGCATTTGCAATCAATAGCGGGACGTTTGAACAGCTTTTGGTCAATGGCGACGTCAAACAGGCGCTTTTG
CCGATACAGGAGCAGCTGCTGCATACTCCTTCGTATGAATGGATGCTGGGCGGAATAGAAAGAATCAGTGCCATTGCCGT
CCAGATTGGTCTGTCTCTGCTTGTTTTGTACGCGGTTAAAAACCGCCGGCCGCTGTTTTTGCTGTATTCTATTCTTTTAC
ATGCACTGTTTAATGTCCCGGCGGTTTTATATCAAAGAGGAATCATAGAGCATGCTGCAGCTGTTGAAATCATTGTTGCT
CTTATAGCGGCTTTATCAGTTTATTGGATTGTAAAAGCAAAAAGGGTGTTTCAATAA

Upstream 100 bases:

>100_bases
TAACACTAGATATTAGTATCTGGTACTAAAAAGAAGGTTTTTTTACAAAAAAAGAGAAGTGTAGATAGGAATCTATGAAA
AAGAAAAAGGAGGCTGAAAA

Downstream 100 bases:

>100_bases
AAGGTCCAAGCAGCAGCAATGCCCGCTTGGAAAAATGTGAATGGAAATATTCATTAAGCATGGGTCATCAGAATATTTCT
GATTCAGTCTTTAGCAATGA

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MVSQEAVVFLALSGAIAFLLPIGLIVWFKRKYGASLKVFFIGALTFFVFAQLLEGGVHVYVLQVNEMTKEAMQHPLWYGI
YGCLMAGIFEECGRYLMMRFFMKRHHTWADGLAFGAGHGGLEAILITGLSSISLIVYAFAINSGTFEQLLVNGDVKQALL
PIQEQLLHTPSYEWMLGGIERISAIAVQIGLSLLVLYAVKNRRPLFLLYSILLHALFNVPAVLYQRGIIEHAAAVEIIVA
LIAALSVYWIVKAKRVFQ

Sequences:

>Translated_258_residues
MVSQEAVVFLALSGAIAFLLPIGLIVWFKRKYGASLKVFFIGALTFFVFAQLLEGGVHVYVLQVNEMTKEAMQHPLWYGI
YGCLMAGIFEECGRYLMMRFFMKRHHTWADGLAFGAGHGGLEAILITGLSSISLIVYAFAINSGTFEQLLVNGDVKQALL
PIQEQLLHTPSYEWMLGGIERISAIAVQIGLSLLVLYAVKNRRPLFLLYSILLHALFNVPAVLYQRGIIEHAAAVEIIVA
LIAALSVYWIVKAKRVFQ
>Mature_258_residues
MVSQEAVVFLALSGAIAFLLPIGLIVWFKRKYGASLKVFFIGALTFFVFAQLLEGGVHVYVLQVNEMTKEAMQHPLWYGI
YGCLMAGIFEECGRYLMMRFFMKRHHTWADGLAFGAGHGGLEAILITGLSSISLIVYAFAINSGTFEQLLVNGDVKQALL
PIQEQLLHTPSYEWMLGGIERISAIAVQIGLSLLVLYAVKNRRPLFLLYSILLHALFNVPAVLYQRGIIEHAAAVEIIVA
LIAALSVYWIVKAKRVFQ

Specific function: Unknown

COG id: COG4377

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHFC_BACSU (O07601)

Other databases:

- EMBL:   Y14083
- EMBL:   AL009126
- PIR:   A69830
- RefSeq:   NP_388899.1
- ProteinModelPortal:   O07601
- EnsemblBacteria:   EBBACT00000002886
- GeneID:   936308
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU10180
- NMPDR:   fig|224308.1.peg.1018
- GenoList:   BSU10180
- GeneTree:   EBGT00050000003265
- HOGENOM:   HBG702017
- OMA:   FAMLING
- ProtClustDB:   CLSK2752354
- BioCyc:   BSUB:BSU10180-MONOMER
- InterPro:   IPR011397
- PIRSF:   PIRSF033101

Pfam domain/function: PF10086 DUF2324

EC number: NA

Molecular weight: Translated: 28710; Mature: 28710

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xdb8bcf0)-; HASH(0xdfde2a4)-; HASH(0xd6a7d70)-; HASH(0xdcc1edc)-; HASH(0xb48bcbc)-; HASH(0xde911b8)-; HASH(0xe32a460)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSQEAVVFLALSGAIAFLLPIGLIVWFKRKYGASLKVFFIGALTFFVFAQLLEGGVHVY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEE
VLQVNEMTKEAMQHPLWYGIYGCLMAGIFEECGRYLMMRFFMKRHHTWADGLAFGAGHGG
EEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC
LEAILITGLSSISLIVYAFAINSGTFEQLLVNGDVKQALLPIQEQLLHTPSYEWMLGGIE
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
RISAIAVQIGLSLLVLYAVKNRRPLFLLYSILLHALFNVPAVLYQRGIIEHAAAVEIIVA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAALSVYWIVKAKRVFQ
HHHHHHHHHHHHHHHHCH
>Mature Secondary Structure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HHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377