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The map label for this gene is yfhF

Identifier: 16077918

GI number: 16077918

Start: 924633

End: 925544

Strand: Reverse

Name: yfhF

Synonym: BSU08510

Alternate gene names: 16077918

Gene position: 925544-924633 (Counterclockwise)

Preceding gene: 50812199

Following gene: 16077917

Centisome position: 21.96

GC content: 49.45

Gene sequence:

>912_bases
ATGAATATCGCAATGACGGGCGGAACCGGTTTTCTCGGCCAGCATCTGACAGGCGTTCTTACCCGCCAGGGACACCATGT
TTATATTTTATCAAGAAACGCAAGGGAAACTGAACAAAAAAATATGACATATGTCCAATGGCTGTCGGAAGGAGCCGCAC
CGGAGCAGGAACTTCCTCATATTGATGTCTGGATAAATCTTGCGGGAAAATCGATTTTTGGCCGCTGGACAGAAAAAACG
AAGCAGCACATTCTCTCCAGCCGTATCAATGCGACGCGTGAAGTGCAGCGGCTTATTCAGAAACAGAAGGAGAAGCCGAA
GACATTGATCCAAGCCAGTGCCGTGGGCATTTACGGCACAAGCCTTGAGAAAACTTTCACAGAGGATTCTGCAACGTCAG
ATGAGGATTTTCTCAGCCATACTGCACACCTGTGGGAAAAGGAAGGACAGCATATTGAAGCGATGGGCATCCGGACAGTT
TATGCGAGATTTGGCGTGATGCTTGGAGAAAAAGGCGCTCTCCCGCTCATGATTCTCCCCTATAAGTTTCTGGCCGGCGG
AACGATCGGAACGGGAAGGCAGTGGCTGTCATGGATTCATGTCGAGGATGCGGCCCAGATGATCCGATATGCGGTGGAAA
ACGCCGGCATCTCAGGCCCAATGAATGTCACCGCGCCCAATCCTGTGGACATGAAGCAATTCGGAAAAACGATTGCACGG
GTGAAGCACCGCCCGCACTGGCTCCCCGTCCCGGAATTCTTTTTATCAAAAGCATTGGGTGAAATGAGTCTTTTGATTGT
GAAAGGACAGCGCGCTCTTCCGAAAAAAGCGATAACCTCTGGATTTCGTTTTACATATTCGGATCTTGAATTTGCACTCT
CACAGCTGATAGCGGACCGAAAGACTGTATAA

Upstream 100 bases:

>100_bases
AATAAACGGCATCTTAATCTCCCTTCTCAGGCCTGAAACGCGTTTTCTTTTATTACAATGAGGTAAAGTATATTTATTAG
AACGATGAGGAGAGATGTTC

Downstream 100 bases:

>100_bases
AAACAGCAGGAAGCGTCAACCTTAAGAATAACATGGTTGAAGGAGGTCCTTTTTATGGAAAAAAAGAGGGAGAAGCACCA
GCAAGGCGCCAACCTGAAAA

Product: nucleotide binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNIAMTGGTGFLGQHLTGVLTRQGHHVYILSRNARETEQKNMTYVQWLSEGAAPEQELPHIDVWINLAGKSIFGRWTEKT
KQHILSSRINATREVQRLIQKQKEKPKTLIQASAVGIYGTSLEKTFTEDSATSDEDFLSHTAHLWEKEGQHIEAMGIRTV
YARFGVMLGEKGALPLMILPYKFLAGGTIGTGRQWLSWIHVEDAAQMIRYAVENAGISGPMNVTAPNPVDMKQFGKTIAR
VKHRPHWLPVPEFFLSKALGEMSLLIVKGQRALPKKAITSGFRFTYSDLEFALSQLIADRKTV

Sequences:

>Translated_303_residues
MNIAMTGGTGFLGQHLTGVLTRQGHHVYILSRNARETEQKNMTYVQWLSEGAAPEQELPHIDVWINLAGKSIFGRWTEKT
KQHILSSRINATREVQRLIQKQKEKPKTLIQASAVGIYGTSLEKTFTEDSATSDEDFLSHTAHLWEKEGQHIEAMGIRTV
YARFGVMLGEKGALPLMILPYKFLAGGTIGTGRQWLSWIHVEDAAQMIRYAVENAGISGPMNVTAPNPVDMKQFGKTIAR
VKHRPHWLPVPEFFLSKALGEMSLLIVKGQRALPKKAITSGFRFTYSDLEFALSQLIADRKTV
>Mature_303_residues
MNIAMTGGTGFLGQHLTGVLTRQGHHVYILSRNARETEQKNMTYVQWLSEGAAPEQELPHIDVWINLAGKSIFGRWTEKT
KQHILSSRINATREVQRLIQKQKEKPKTLIQASAVGIYGTSLEKTFTEDSATSDEDFLSHTAHLWEKEGQHIEAMGIRTV
YARFGVMLGEKGALPLMILPYKFLAGGTIGTGRQWLSWIHVEDAAQMIRYAVENAGISGPMNVTAPNPVDMKQFGKTIAR
VKHRPHWLPVPEFFLSKALGEMSLLIVKGQRALPKKAITSGFRFTYSDLEFALSQLIADRKTV

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily

Homologues:

Organism=Homo sapiens, GI116812630, Length=303, Percent_Identity=30.03300330033, Blast_Score=164, Evalue=8e-41,
Organism=Escherichia coli, GI1788642, Length=299, Percent_Identity=36.4548494983278, Blast_Score=185, Evalue=3e-48,
Organism=Drosophila melanogaster, GI28573846, Length=295, Percent_Identity=30.5084745762712, Blast_Score=149, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFHF_BACSU (O31574)

Other databases:

- EMBL:   D85082
- EMBL:   AL009126
- PIR:   G69800
- RefSeq:   NP_388732.1
- ProteinModelPortal:   O31574
- SMR:   O31574
- EnsemblBacteria:   EBBACT00000004056
- GeneID:   939217
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU08510
- NMPDR:   fig|224308.1.peg.851
- GenoList:   BSU08510
- GeneTree:   EBGT00050000002804
- HOGENOM:   HBG462742
- OMA:   PPHTFIS
- PhylomeDB:   O31574
- ProtClustDB:   CLSK2392228
- BioCyc:   BSUB:BSU08510-MONOMER
- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099
- Gene3D:   G3DSA:3.40.50.720
- PANTHER:   PTHR11092
- TIGRFAMs:   TIGR01777

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase

EC number: NA

Molecular weight: Translated: 33942; Mature: 33942

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIAMTGGTGFLGQHLTGVLTRQGHHVYILSRNARETEQKNMTYVQWLSEGAAPEQELPH
CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHCCHHHHHHHCCCCCHHHCCE
IDVWINLAGKSIFGRWTEKTKQHILSSRINATREVQRLIQKQKEKPKTLIQASAVGIYGT
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECC
SLEKTFTEDSATSDEDFLSHTAHLWEKEGQHIEAMGIRTVYARFGVMLGEKGALPLMILP
CHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCCEEEEC
YKFLAGGTIGTGRQWLSWIHVEDAAQMIRYAVENAGISGPMNVTAPNPVDMKQFGKTIAR
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
VKHRPHWLPVPEFFLSKALGEMSLLIVKGQRALPKKAITSGFRFTYSDLEFALSQLIADR
HHCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHCCCCEEHHHHHHHHHHHHHHC
KTV
CCC
>Mature Secondary Structure
MNIAMTGGTGFLGQHLTGVLTRQGHHVYILSRNARETEQKNMTYVQWLSEGAAPEQELPH
CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHCCHHHHHHHCCCCCHHHCCE
IDVWINLAGKSIFGRWTEKTKQHILSSRINATREVQRLIQKQKEKPKTLIQASAVGIYGT
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECC
SLEKTFTEDSATSDEDFLSHTAHLWEKEGQHIEAMGIRTVYARFGVMLGEKGALPLMILP
CHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCCEEEEC
YKFLAGGTIGTGRQWLSWIHVEDAAQMIRYAVENAGISGPMNVTAPNPVDMKQFGKTIAR
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
VKHRPHWLPVPEFFLSKALGEMSLLIVKGQRALPKKAITSGFRFTYSDLEFALSQLIADR
HHCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHCCCCEEHHHHHHHHHHHHHHC
KTV
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377