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The map label for this gene is yfiH

Identifier: 16077894

GI number: 16077894

Start: 901555

End: 902496

Strand: Direct

Name: yfiH

Synonym: BSU08270

Alternate gene names: 16077894

Gene position: 901555-902496 (Clockwise)

Preceding gene: 16077893

Following gene: 16077895

Centisome position: 21.39

GC content: 47.03

Gene sequence:

>942_bases
ATGAAACTATCTTATGTAACAGACAGCCTAGGGCATTTGCCTTTTGAAGACATGCTCAATTTTGCCGCAAAGCTTGGGAT
CGATACACTTGAAATGACAACCGGGGGCTGGTCGCCGGCACCTCACTTGAATCTTGATGAATTGCTGCAAAGCAGCGAAA
AAAGAAAAGAATTTTCACAAGCGCTGGAAAAGCGGAACATGACACTTTGCGCATTAAACTGCTCGGGGAACCCTTTAGAT
CCGGGTGAATTGGGCAAATCGCACAGAGACATAACTGACAAAACGATGGAGCTGGCTGGATTATTAGGCGTCAAAAAAGT
GATCATGATGAGCGGTTTGCCAGCCGGCGGCCCGGACGACAAAGTGCCGAACTGGATCACATACACAGTAAGCTGGCCTC
CCGTTTTAAAAGATATCCTCAACTATCAATGGGAAGACGTTGCGATCCCATATTGGAAGAAGCTTGTCAAAAAAGCGGAG
GCCTGCGGCGTGGGGAAAATAGCGCTTGAGAACTTCAGCTCTCAATTAGTCTATAATCCTGAGACTCTCTTTCGGCTCAG
AAATGCAGTCGGCCCGATGGTCGGTTTGAATCTTGACCCGAGCCATTTGTTATGGATGGGCGCAGACCCGATCATCGCAG
CAAGGGAGCTCGGCTCAGCCATTCACCATGTCCATGGGAAAGATGTCAGAATTGAAAGATATTTATCGGCGGTCAACGGA
CTTTTAGAAACAAAAGAAGTGACAGATCCTGCAAACCGGGCGTGGAATTACGTAGCTGTCGGCTGTGGACAGGATTTACA
GTGGTGGAAGGAATTTTTTTCAGTTGTAAAAATGATGGGATATGAAGGTGAGGTTTCTTTAGAAATGGAGGATCTGACGA
TGTCACCTGAAGCGGGCATCCGTACTTCTGTAGAAGCTTTAAAACAAACCATCAGCCAATAG

Upstream 100 bases:

>100_bases
TTGAGCATTCCTTTCGCCAGTATGGCCGCCGCGCTGATCAGGAAATCCAAAATCAAACAACTCACTTATCGTAACCTGAG
ATACCAGGAGGAATCTATCA

Downstream 100 bases:

>100_bases
GAGGTTTTCATGATGCTAAATGGAGAAAGAATCATCTCTAAGCCGCTTCGCTGGGCAATGGTAGGCGGCGGGCGGCTCAG
CCAGGTTGGATATAAACATC

Product: sugar-phosphate epimerase/isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKLSYVTDSLGHLPFEDMLNFAAKLGIDTLEMTTGGWSPAPHLNLDELLQSSEKRKEFSQALEKRNMTLCALNCSGNPLD
PGELGKSHRDITDKTMELAGLLGVKKVIMMSGLPAGGPDDKVPNWITYTVSWPPVLKDILNYQWEDVAIPYWKKLVKKAE
ACGVGKIALENFSSQLVYNPETLFRLRNAVGPMVGLNLDPSHLLWMGADPIIAARELGSAIHHVHGKDVRIERYLSAVNG
LLETKEVTDPANRAWNYVAVGCGQDLQWWKEFFSVVKMMGYEGEVSLEMEDLTMSPEAGIRTSVEALKQTISQ

Sequences:

>Translated_313_residues
MKLSYVTDSLGHLPFEDMLNFAAKLGIDTLEMTTGGWSPAPHLNLDELLQSSEKRKEFSQALEKRNMTLCALNCSGNPLD
PGELGKSHRDITDKTMELAGLLGVKKVIMMSGLPAGGPDDKVPNWITYTVSWPPVLKDILNYQWEDVAIPYWKKLVKKAE
ACGVGKIALENFSSQLVYNPETLFRLRNAVGPMVGLNLDPSHLLWMGADPIIAARELGSAIHHVHGKDVRIERYLSAVNG
LLETKEVTDPANRAWNYVAVGCGQDLQWWKEFFSVVKMMGYEGEVSLEMEDLTMSPEAGIRTSVEALKQTISQ
>Mature_313_residues
MKLSYVTDSLGHLPFEDMLNFAAKLGIDTLEMTTGGWSPAPHLNLDELLQSSEKRKEFSQALEKRNMTLCALNCSGNPLD
PGELGKSHRDITDKTMELAGLLGVKKVIMMSGLPAGGPDDKVPNWITYTVSWPPVLKDILNYQWEDVAIPYWKKLVKKAE
ACGVGKIALENFSSQLVYNPETLFRLRNAVGPMVGLNLDPSHLLWMGADPIIAARELGSAIHHVHGKDVRIERYLSAVNG
LLETKEVTDPANRAWNYVAVGCGQDLQWWKEFFSVVKMMGYEGEVSLEMEDLTMSPEAGIRTSVEALKQTISQ

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFIH_BACSU (P54724)

Other databases:

- EMBL:   D78508
- EMBL:   AL009126
- EMBL:   D50543
- PIR:   C69803
- RefSeq:   NP_388708.1
- ProteinModelPortal:   P54724
- EnsemblBacteria:   EBBACT00000001754
- GeneID:   939706
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU08270
- NMPDR:   fig|224308.1.peg.827
- GenoList:   BSU08270
- GeneTree:   EBGT00050000006190
- HOGENOM:   HBG292407
- OMA:   WMGADPI
- ProtClustDB:   CLSK872972
- BioCyc:   BSUB:BSU08270-MONOMER
- InterPro:   IPR011418
- InterPro:   IPR013022
- InterPro:   IPR012307
- Gene3D:   G3DSA:3.20.20.150

Pfam domain/function: PF01261 AP_endonuc_2; PF07582 AP_endonuc_2_N; SSF51658 Xyl_isomerase-like_TIM-brl

EC number: NA

Molecular weight: Translated: 34761; Mature: 34761

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSYVTDSLGHLPFEDMLNFAAKLGIDTLEMTTGGWSPAPHLNLDELLQSSEKRKEFSQ
CCCCCHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
ALEKRNMTLCALNCSGNPLDPGELGKSHRDITDKTMELAGLLGVKKVIMMSGLPAGGPDD
HHHHCCCEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
KVPNWITYTVSWPPVLKDILNYQWEDVAIPYWKKLVKKAEACGVGKIALENFSSQLVYNP
CCCCEEEEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEECH
ETLFRLRNAVGPMVGLNLDPSHLLWMGADPIIAARELGSAIHHVHGKDVRIERYLSAVNG
HHHHHHHHHHCCEEECCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LLETKEVTDPANRAWNYVAVGCGQDLQWWKEFFSVVKMMGYEGEVSLEMEDLTMSPEAGI
HHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCH
RTSVEALKQTISQ
HHHHHHHHHHHCC
>Mature Secondary Structure
MKLSYVTDSLGHLPFEDMLNFAAKLGIDTLEMTTGGWSPAPHLNLDELLQSSEKRKEFSQ
CCCCCHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
ALEKRNMTLCALNCSGNPLDPGELGKSHRDITDKTMELAGLLGVKKVIMMSGLPAGGPDD
HHHHCCCEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
KVPNWITYTVSWPPVLKDILNYQWEDVAIPYWKKLVKKAEACGVGKIALENFSSQLVYNP
CCCCEEEEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEECH
ETLFRLRNAVGPMVGLNLDPSHLLWMGADPIIAARELGSAIHHVHGKDVRIERYLSAVNG
HHHHHHHHHHCCEEECCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LLETKEVTDPANRAWNYVAVGCGQDLQWWKEFFSVVKMMGYEGEVSLEMEDLTMSPEAGI
HHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCH
RTSVEALKQTISQ
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377; 8704981