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The map label for this gene is yfkR

Identifier: 16077845

GI number: 16077845

Start: 847498

End: 848652

Strand: Reverse

Name: yfkR

Synonym: BSU07780

Alternate gene names: 16077845

Gene position: 848652-847498 (Counterclockwise)

Preceding gene: 16077846

Following gene: 16077844

Centisome position: 20.13

GC content: 45.8

Gene sequence:

>1155_bases
ATGAAGAAAACAATATATAAGTGTGTTTTGCCGCTTCTCATTTGTATCCTTCTAACGGGGTGCTGGGACCGGACAGAAAT
CAATGACATTGCATTTGTTGTCAGCTCAGCCATTGATAAGAAAAAAGATCAGTATCGAGTGGCCATGCAGATTCCCTTGG
TCGGCCAATTAGGCGGACAAACAGGGGGCGGCGGCGGAACTGCCGGTTCAAAAACATGGTATGTTGATTCAGCTTCCGGC
ACTACGATCAGAGAAGCGAACAACAAGCTGCAAACCTCCTTGTCACGGACAATCAATACGTCCCACAGACGTACAGTCAT
TATTGGAGAGGATATGGCGAGAGACGGCGTTGCCCCAGTCTTTGATATTTTAACGCGAAATCCGCAGAACAGATTAACGG
CGCTCATTTTAGTCAGCCGGGGAGAAGCGCGGGACATTTTAAATACCGATGTTCAGCTTGAACAGTTTCCGGCGGAAATG
ATTCGGGAGCTGGCCATTATCGCAACGAGCCGCCCCGTTTTCTTAAGCAGATTCATGTCTGATCTAGTAGAAATAGGCAG
TGATCCGTATGCACCGGTCATCTCTGCATCTAAAACAAAACCTGGAGGGAAAGGCAAATCTAATTTGAAAATTGACGGGC
TTGCGATCTTTAAAAAGGACAGATTGATGGATATTTTCAAAGATGAACACATGACAGCAGCCCTGATGTTGCTGAATCAA
GCCCGCCAGCCAGAATTCATAGTAGACCTGCCGAATCAAATGGGGCAAGCATCCATTCAGCTTCAAAAGTCCAATGCATC
CTTTCATGCCGCTGAAAAAAACGGAAAGCTGTCAATGACAATCGAGATCAGAGCCAAAGGAATTATTATGGAAAACCAAT
CAACCTATGAGACGAGAGAAAATGACCAGTATTACATCATTCAAAAAGCATTAAACAGAACCATAAAGAAGGACGTGATC
AGCACCGTTCATCGTTTGCAAAAGCTAAAGGCGGACCCGGCCGGCTTTCAAGACAGGACCATCAGAAGCACGGCAACCAC
GAAGAATCTGCTGAAAAAGGAATGGGAAGAGGTATATAAGGATATGGAGGTTCACGTCGTCCCAATTGTGACGATTGAGC
AGGGCGGTGTCCTATACAAAACGATCAGCCATTAA

Upstream 100 bases:

>100_bases
GATATTTTTGTCAGGGCGCCTTGGTGGACGATGACCAGAAGGCCGGGCACGTATTCGCGCGGCAACGGACAGAAGGGAGC
GAAAAGAGAGGACCCAAAAG

Downstream 100 bases:

>100_bases
TGGAGGTGCGTCAGCATGATCAGCTATATCGTACAGACATTGATTGTGTGCATTGCCATATACGCATATGAATGGAAGAA
TTTTCGTTCCGCTAACAATC

Product: spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKKTIYKCVLPLLICILLTGCWDRTEINDIAFVVSSAIDKKKDQYRVAMQIPLVGQLGGQTGGGGGTAGSKTWYVDSASG
TTIREANNKLQTSLSRTINTSHRRTVIIGEDMARDGVAPVFDILTRNPQNRLTALILVSRGEARDILNTDVQLEQFPAEM
IRELAIIATSRPVFLSRFMSDLVEIGSDPYAPVISASKTKPGGKGKSNLKIDGLAIFKKDRLMDIFKDEHMTAALMLLNQ
ARQPEFIVDLPNQMGQASIQLQKSNASFHAAEKNGKLSMTIEIRAKGIIMENQSTYETRENDQYYIIQKALNRTIKKDVI
STVHRLQKLKADPAGFQDRTIRSTATTKNLLKKEWEEVYKDMEVHVVPIVTIEQGGVLYKTISH

Sequences:

>Translated_384_residues
MKKTIYKCVLPLLICILLTGCWDRTEINDIAFVVSSAIDKKKDQYRVAMQIPLVGQLGGQTGGGGGTAGSKTWYVDSASG
TTIREANNKLQTSLSRTINTSHRRTVIIGEDMARDGVAPVFDILTRNPQNRLTALILVSRGEARDILNTDVQLEQFPAEM
IRELAIIATSRPVFLSRFMSDLVEIGSDPYAPVISASKTKPGGKGKSNLKIDGLAIFKKDRLMDIFKDEHMTAALMLLNQ
ARQPEFIVDLPNQMGQASIQLQKSNASFHAAEKNGKLSMTIEIRAKGIIMENQSTYETRENDQYYIIQKALNRTIKKDVI
STVHRLQKLKADPAGFQDRTIRSTATTKNLLKKEWEEVYKDMEVHVVPIVTIEQGGVLYKTISH
>Mature_384_residues
MKKTIYKCVLPLLICILLTGCWDRTEINDIAFVVSSAIDKKKDQYRVAMQIPLVGQLGGQTGGGGGTAGSKTWYVDSASG
TTIREANNKLQTSLSRTINTSHRRTVIIGEDMARDGVAPVFDILTRNPQNRLTALILVSRGEARDILNTDVQLEQFPAEM
IRELAIIATSRPVFLSRFMSDLVEIGSDPYAPVISASKTKPGGKGKSNLKIDGLAIFKKDRLMDIFKDEHMTAALMLLNQ
ARQPEFIVDLPNQMGQASIQLQKSNASFHAAEKNGKLSMTIEIRAKGIIMENQSTYETRENDQYYIIQKALNRTIKKDVI
STVHRLQKLKADPAGFQDRTIRSTATTKNLLKKEWEEVYKDMEVHVVPIVTIEQGGVLYKTISH

Specific function: May be involved in spore germination

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFKR_BACSU (O35028)

Other databases:

- EMBL:   D86417
- EMBL:   AL009126
- PIR:   D69809
- RefSeq:   NP_388659.1
- ProteinModelPortal:   O35028
- EnsemblBacteria:   EBBACT00000000016
- GeneID:   936126
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU07780
- NMPDR:   fig|224308.1.peg.778
- GenoList:   BSU07780
- GeneTree:   EBGT00050000001336
- OMA:   VSGCWDR
- ProtClustDB:   CLSK2460895
- BioCyc:   BSUB:BSU07780-MONOMER
- InterPro:   IPR008844
- TIGRFAMs:   TIGR02887

Pfam domain/function: PF05504 Spore_GerAC

EC number: NA

Molecular weight: Translated: 42797; Mature: 42797

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTIYKCVLPLLICILLTGCWDRTEINDIAFVVSSAIDKKKDQYRVAMQIPLVGQLGGQ
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCC
TGGGGGTAGSKTWYVDSASGTTIREANNKLQTSLSRTINTSHRRTVIIGEDMARDGVAPV
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
FDILTRNPQNRLTALILVSRGEARDILNTDVQLEQFPAEMIRELAIIATSRPVFLSRFMS
HHHHCCCCCHHEEEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DLVEIGSDPYAPVISASKTKPGGKGKSNLKIDGLAIFKKDRLMDIFKDEHMTAALMLLNQ
HHHHHCCCCCCCCEECCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
ARQPEFIVDLPNQMGQASIQLQKSNASFHAAEKNGKLSMTIEIRAKGIIMENQSTYETRE
CCCCCEEEECCCCCCCEEEEEEECCCCEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCC
NDQYYIIQKALNRTIKKDVISTVHRLQKLKADPAGFQDRTIRSTATTKNLLKKEWEEVYK
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHC
DMEVHVVPIVTIEQGGVLYKTISH
CCEEEEEEEEEEECCCEEEEECCC
>Mature Secondary Structure
MKKTIYKCVLPLLICILLTGCWDRTEINDIAFVVSSAIDKKKDQYRVAMQIPLVGQLGGQ
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCC
TGGGGGTAGSKTWYVDSASGTTIREANNKLQTSLSRTINTSHRRTVIIGEDMARDGVAPV
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
FDILTRNPQNRLTALILVSRGEARDILNTDVQLEQFPAEMIRELAIIATSRPVFLSRFMS
HHHHCCCCCHHEEEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DLVEIGSDPYAPVISASKTKPGGKGKSNLKIDGLAIFKKDRLMDIFKDEHMTAALMLLNQ
HHHHHCCCCCCCCEECCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
ARQPEFIVDLPNQMGQASIQLQKSNASFHAAEKNGKLSMTIEIRAKGIIMENQSTYETRE
CCCCCEEEECCCCCCCEEEEEEECCCCEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCC
NDQYYIIQKALNRTIKKDVISTVHRLQKLKADPAGFQDRTIRSTATTKNLLKKEWEEVYK
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHC
DMEVHVVPIVTIEQGGVLYKTISH
CCEEEEEEEEEEECCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377