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The map label for this gene is yfmP

Identifier: 16077806

GI number: 16077806

Start: 812140

End: 812562

Strand: Direct

Name: yfmP

Synonym: BSU07390

Alternate gene names: 16077806

Gene position: 812140-812562 (Clockwise)

Preceding gene: 16077805

Following gene: 16077807

Centisome position: 19.27

GC content: 46.81

Gene sequence:

>423_bases
TTGGAATGGATGAAGATTGATCAAGTGGCCAAAAGAAGCGGGCTGACAAAGCGGACCATCCGGTTTTATGAAGAAATCGG
CTTGATTCCGGCGCCGAAACGGACAGACGGCGGTGTAAGGCTTTATTCAGAGGATGATATGGAGGAGCTTGAGAAAGTCA
TCAGCACAAAAGAGGTGCTCGGTTTTTCCCTTCAGGAGCTTCAGCATTTCATGGAAACCAGCCGCCAGCTAGAGTTAAAC
AAAGAGGGGTATTTGTTGTCACTGGATCCTAAGGAACGGAAAGAAAAACTGGAGGAAATTCAGGAAACCCTGAATCACCA
GCTGGATTTGATTGATGAGAAAATCCGCACATTCCAAAGCTTTAAAGAACGCCTGCAGGGCATGAAAGGCAAAGCGGAAC
GCGCCATTCAATCAATCGAATGA

Upstream 100 bases:

>100_bases
GTATGCTGCTCGTCTTTTTTATTGTTTTTTAAAACTTAACGTTTACGTTAAGGTTCAAAAGGTGTATAATGGTAACAGAA
ACGGCGAAGGGGGATTTACC

Downstream 100 bases:

>100_bases
AAAGTTTGTTAAACGCTATTTTTGTAGCGTTTCTTTTAATGGAATAAAGATGGAGGTTAGGTCAAATGGATAAGACAACA
CAAGTGAATCAGAAAACGGG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MEWMKIDQVAKRSGLTKRTIRFYEEIGLIPAPKRTDGGVRLYSEDDMEELEKVISTKEVLGFSLQELQHFMETSRQLELN
KEGYLLSLDPKERKEKLEEIQETLNHQLDLIDEKIRTFQSFKERLQGMKGKAERAIQSIE

Sequences:

>Translated_140_residues
MEWMKIDQVAKRSGLTKRTIRFYEEIGLIPAPKRTDGGVRLYSEDDMEELEKVISTKEVLGFSLQELQHFMETSRQLELN
KEGYLLSLDPKERKEKLEEIQETLNHQLDLIDEKIRTFQSFKERLQGMKGKAERAIQSIE
>Mature_140_residues
MEWMKIDQVAKRSGLTKRTIRFYEEIGLIPAPKRTDGGVRLYSEDDMEELEKVISTKEVLGFSLQELQHFMETSRQLELN
KEGYLLSLDPKERKEKLEEIQETLNHQLDLIDEKIRTFQSFKERLQGMKGKAERAIQSIE

Specific function: Repressor of the yfmOP operon. A mutation in yfmP leads to overexpression of yfmO, probably causing a decrease in cellular copper that is eventually responsible for a reduced copper induction of copZA

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFMP_BACSU (O06474)

Other databases:

- EMBL:   D86418
- EMBL:   AL009126
- PIR:   G69813
- RefSeq:   NP_388620.1
- ProteinModelPortal:   O06474
- SMR:   O06474
- EnsemblBacteria:   EBBACT00000003023
- GeneID:   936101
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU07390
- NMPDR:   fig|224308.1.peg.739
- GenoList:   BSU07390
- GeneTree:   EBGT00070000032086
- HOGENOM:   HBG710951
- OMA:   DEDTIER
- ProtClustDB:   CLSK886847
- BioCyc:   BSUB:BSU07390-MONOMER
- InterPro:   IPR009061
- InterPro:   IPR000551
- PRINTS:   PR00040
- SMART:   SM00422

Pfam domain/function: PF00376 MerR; SSF46955 Putativ_DNA_bind

EC number: NA

Molecular weight: Translated: 16503; Mature: 16503

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00552 HTH_MERR_1; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWMKIDQVAKRSGLTKRTIRFYEEIGLIPAPKRTDGGVRLYSEDDMEELEKVISTKEVL
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH
GFSLQELQHFMETSRQLELNKEGYLLSLDPKERKEKLEEIQETLNHQLDLIDEKIRTFQS
HHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKERLQGMKGKAERAIQSIE
HHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MEWMKIDQVAKRSGLTKRTIRFYEEIGLIPAPKRTDGGVRLYSEDDMEELEKVISTKEVL
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH
GFSLQELQHFMETSRQLELNKEGYLLSLDPKERKEKLEEIQETLNHQLDLIDEKIRTFQS
HHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKERLQGMKGKAERAIQSIE
HHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377