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The map label for this gene is ydfR

Identifier: 16077620

GI number: 16077620

Start: 600229

End: 600906

Strand: Reverse

Name: ydfR

Synonym: BSU05530

Alternate gene names: 16077620

Gene position: 600906-600229 (Counterclockwise)

Preceding gene: 16077622

Following gene: 255767146

Centisome position: 14.25

GC content: 40.12

Gene sequence:

>678_bases
ATGAACCGACTGCCTTTCGGATATATTAAATTGCGATTGGCCGGAAGAAAAGCCAATCCCATGACAAATCTAATTCATCA
TTGGTCAGGTGGTAGCATGAATTTCACTTGGGAATCTCTTGTTCTCATTGTAGCCGGGGTCATTTTGCTGAGAATTTCAG
GAAGGAAATCAATCGCACAAATGACGTCGACTCAAACGGTTGTCATGATTTCGATCGGAACTATTATCGTTCAGCCAATC
ATCGAGTACAGCCTCTTCAAAACATTAATTGCAGCGGCAATTTTCACAAGCACACTCATCGTTATGGAATGGATCCAAAT
GAAATCGAACACCATTGAAAAGATGTTAACCGGAAAAGCAAAAATCGTCATTGAAAACGGACAGCTTCATATCGAAAACT
TAAAGAAGATGAGACTTACAGCTGACCAGCTTGAAATGCAGCTAAGGCTTCACGGCGTTACGGCTATACAAGATGTCAAA
ATTGCGACATTAGAGGCAAACGGGCAATTAGGAATAGAATTAACTGATGACGCCAAGCCTTTAACAGTCAGGGATCTGAA
AAAACTCATTCACCCCGATTTCATAAATAAGGACGGACAAGCCCAGTCTGGCAATCAGAATATTTTTGATGAAGTTGGCA
AAAAAAATAAAAAAAACGTCCCTAAAAAGCTGCATTAA

Upstream 100 bases:

>100_bases
CCCGCTTCCCAGATTGTTTCGGCCAAAAAACTCCTGTTGCTATCATTGTTTGGCTTAATATATCCATCTATACCAAAAAT
ATTGTTCGGTTCAGGACAGA

Downstream 100 bases:

>100_bases
CAAAAGGCGCTTGTGGCATTTTGCAGGTTTTTGTCTCTTACTGAAAGTTTTTGCCGTTTTGTTTAAGCAACTGCTGCTCA
CACACCATATTGTATAAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MNRLPFGYIKLRLAGRKANPMTNLIHHWSGGSMNFTWESLVLIVAGVILLRISGRKSIAQMTSTQTVVMISIGTIIVQPI
IEYSLFKTLIAAAIFTSTLIVMEWIQMKSNTIEKMLTGKAKIVIENGQLHIENLKKMRLTADQLEMQLRLHGVTAIQDVK
IATLEANGQLGIELTDDAKPLTVRDLKKLIHPDFINKDGQAQSGNQNIFDEVGKKNKKNVPKKLH

Sequences:

>Translated_225_residues
MNRLPFGYIKLRLAGRKANPMTNLIHHWSGGSMNFTWESLVLIVAGVILLRISGRKSIAQMTSTQTVVMISIGTIIVQPI
IEYSLFKTLIAAAIFTSTLIVMEWIQMKSNTIEKMLTGKAKIVIENGQLHIENLKKMRLTADQLEMQLRLHGVTAIQDVK
IATLEANGQLGIELTDDAKPLTVRDLKKLIHPDFINKDGQAQSGNQNIFDEVGKKNKKNVPKKLH
>Mature_225_residues
MNRLPFGYIKLRLAGRKANPMTNLIHHWSGGSMNFTWESLVLIVAGVILLRISGRKSIAQMTSTQTVVMISIGTIIVQPI
IEYSLFKTLIAAAIFTSTLIVMEWIQMKSNTIEKMLTGKAKIVIENGQLHIENLKKMRLTADQLEMQLRLHGVTAIQDVK
IATLEANGQLGIELTDDAKPLTVRDLKKLIHPDFINKDGQAQSGNQNIFDEVGKKNKKNVPKKLH

Specific function: Unknown

COG id: COG2323

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0702 family

Homologues:

Organism=Escherichia coli, GI1787135, Length=143, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDFR_BACSU (P96696)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   H69781
- RefSeq:   NP_388434.1
- ProteinModelPortal:   P96696
- SMR:   P96696
- EnsemblBacteria:   EBBACT00000002335
- GeneID:   939897
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05530
- NMPDR:   fig|224308.1.peg.553
- GenoList:   BSU05530
- GeneTree:   EBGT00070000032197
- HOGENOM:   HBG340231
- OMA:   GRIGYQL
- PhylomeDB:   P96696
- ProtClustDB:   CLSK2459890
- BioCyc:   BSUB:BSU05530-MONOMER
- InterPro:   IPR007353
- InterPro:   IPR023090

Pfam domain/function: PF04239 DUF421

EC number: NA

Molecular weight: Translated: 25164; Mature: 25164

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd102854)-; HASH(0xc2a7ca8)-; HASH(0xccacb04)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLPFGYIKLRLAGRKANPMTNLIHHWSGGSMNFTWESLVLIVAGVILLRISGRKSIAQ
CCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHH
MTSTQTVVMISIGTIIVQPIIEYSLFKTLIAAAIFTSTLIVMEWIQMKSNTIEKMLTGKA
HHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
KIVIENGQLHIENLKKMRLTADQLEMQLRLHGVTAIQDVKIATLEANGQLGIELTDDAKP
EEEEECCEEEECHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEECCCEEEEEECCCCCC
LTVRDLKKLIHPDFINKDGQAQSGNQNIFDEVGKKNKKNVPKKLH
CCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCH
>Mature Secondary Structure
MNRLPFGYIKLRLAGRKANPMTNLIHHWSGGSMNFTWESLVLIVAGVILLRISGRKSIAQ
CCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHH
MTSTQTVVMISIGTIIVQPIIEYSLFKTLIAAAIFTSTLIVMEWIQMKSNTIEKMLTGKA
HHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
KIVIENGQLHIENLKKMRLTADQLEMQLRLHGVTAIQDVKIATLEANGQLGIELTDDAKP
EEEEECCEEEECHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEECCCEEEEEECCCCCC
LTVRDLKKLIHPDFINKDGQAQSGNQNIFDEVGKKNKKNVPKKLH
CCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377