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The map label for this gene is ydaC

Identifier: 16077485

GI number: 16077485

Start: 470957

End: 471502

Strand: Reverse

Name: ydaC

Synonym: BSU04180

Alternate gene names: 16077485

Gene position: 471502-470957 (Counterclockwise)

Preceding gene: 16077491

Following gene: 16077480

Centisome position: 11.18

GC content: 47.8

Gene sequence:

>546_bases
ATGATTGCCGGGTACATCATGGCTGCTGAAAATCAAACACTGAATCAGTGGACAATCAATCAGCTGGGTATCACGCGCGG
GGACAGCATTTTAGAAGTCGGGTTTGGCCCGGGATACTGCATGCAGCAGATGCTGAAACGCGAGAAGGATGTTCATCTTC
ATGGGATTGATGTATCAGAGGCCATGCTGAAGCTGGCCGCCCGCAGAGTGAAACCAAAGGGCGTACGCCTGATACAAGGA
AGCATCGAGACATTTCCTCTCCCCGCCTCGTTTTATGATAAAGTGATTTCCGTTAACAACTACACCATTTGGAATGACCA
AACAAAAGGCATAAAACAGATTTATCGGGCATTAAAGCCAGGCGGCAAAGCAGCCATTACGATGCAGCCGCGGGAAGCGG
ATGCCAGTCCTGAGAAAACCAAATCATTTGGAAGACAGATGATTGCTGACTTTAAAGCAGCCGGCTTCGAAGACATTGAT
ATACAATTTAAGAACATTAAGCCTGAGCTTTCCGTCTGTGCAACTGCAAAGAAGCCCGCCACATAA

Upstream 100 bases:

>100_bases
ACATGGAACGCTGAGAGGAAATTAACTCAAAAAGGGGGTTGGTTGCTGAATGATTAACATGCTTTCTAGAAGATTCAGCA
GGCCAAAGGGCGTCATCGGC

Downstream 100 bases:

>100_bases
AGTGGACGGGCTTCTTCTTTTATGAATGTACAGCCTGATTGCGCAGGACGTCTTTTTTCACCTTGCCAAGGTTGTTTTTC
GGCAGTTCGTTAACAAATTC

Product: methyltransferase

Products: S-Adenosyl-L-Homocysteine; @OCTA02.txt*2- Polyprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol!; Menaquinol. [C]

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MIAGYIMAAENQTLNQWTINQLGITRGDSILEVGFGPGYCMQQMLKREKDVHLHGIDVSEAMLKLAARRVKPKGVRLIQG
SIETFPLPASFYDKVISVNNYTIWNDQTKGIKQIYRALKPGGKAAITMQPREADASPEKTKSFGRQMIADFKAAGFEDID
IQFKNIKPELSVCATAKKPAT

Sequences:

>Translated_181_residues
MIAGYIMAAENQTLNQWTINQLGITRGDSILEVGFGPGYCMQQMLKREKDVHLHGIDVSEAMLKLAARRVKPKGVRLIQG
SIETFPLPASFYDKVISVNNYTIWNDQTKGIKQIYRALKPGGKAAITMQPREADASPEKTKSFGRQMIADFKAAGFEDID
IQFKNIKPELSVCATAKKPAT
>Mature_181_residues
MIAGYIMAAENQTLNQWTINQLGITRGDSILEVGFGPGYCMQQMLKREKDVHLHGIDVSEAMLKLAARRVKPKGVRLIQG
SIETFPLPASFYDKVISVNNYTIWNDQTKGIKQIYRALKPGGKAAITMQPREADASPEKTKSFGRQMIADFKAAGFEDID
IQFKNIKPELSVCATAKKPAT

Specific function: Methyltransferase Required For The Conversion Of Dimethylmenaquinone (Dmkh2) To Menaquinone (Mkh2) And The Conversion Of 2-Polyprenyl-6-Methoxy-1,4-Benzoquinol (Ddmqh2) To 2-Polyprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol (Dmqh2). [C]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDAC_BACSU (P96576)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   C69768
- RefSeq:   NP_388299.1
- ProteinModelPortal:   P96576
- SMR:   P96576
- EnsemblBacteria:   EBBACT00000003472
- GeneID:   940142
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU04180
- NMPDR:   fig|224308.1.peg.418
- GenoList:   BSU04180
- GeneTree:   EBGT00050000000514
- HOGENOM:   HBG345406
- OMA:   AFATEIK
- ProtClustDB:   CLSK886715
- BioCyc:   BSUB:BSU04180-MONOMER
- InterPro:   IPR013216

Pfam domain/function: PF08241 Methyltransf_11

EC number: 2.1.1.- [C]

Molecular weight: Translated: 20092; Mature: 20092

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAGYIMAAENQTLNQWTINQLGITRGDSILEVGFGPGYCMQQMLKREKDVHLHGIDVSE
CCEEEEEECCCCCCCCEEHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEECCCHHH
AMLKLAARRVKPKGVRLIQGSIETFPLPASFYDKVISVNNYTIWNDQTKGIKQIYRALKP
HHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHEECCCEEEECCCCHHHHHHHHHHCC
GGKAAITMQPREADASPEKTKSFGRQMIADFKAAGFEDIDIQFKNIKPELSVCATAKKPA
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHEEECCCCCC
T
C
>Mature Secondary Structure
MIAGYIMAAENQTLNQWTINQLGITRGDSILEVGFGPGYCMQQMLKREKDVHLHGIDVSE
CCEEEEEECCCCCCCCEEHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEECCCHHH
AMLKLAARRVKPKGVRLIQGSIETFPLPASFYDKVISVNNYTIWNDQTKGIKQIYRALKP
HHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHEECCCEEEECCCCHHHHHHHHHHCC
GGKAAITMQPREADASPEKTKSFGRQMIADFKAAGFEDIDIQFKNIKPELSVCATAKKPA
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHEEECCCCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; 2-Polyprenyl-6- Methoxy-1,4-Benzoquinol; Demethylmenaquinol [C]

Specific reaction: S-Adenosyl-L-Methionine + @OCTA02.txt*2-Polyprenyl-6- Methoxy-1,4-Benzoquinol! = S-Adenosyl-L-Homocysteine + 2- Polyprenyl-3-Methyl-6-Methoxy -1,4-Benzoquinol S-Adenosyl-L-Methionine + Demethylmenaquinol = S-Adenosyl-L-Homocysteine + Menaquinol. [C]

General reaction: Transferring one-carbon groups; Methyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377