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The map label for this gene is ybfH

Identifier: 16077290

GI number: 16077290

Start: 241917

End: 242837

Strand: Reverse

Name: ybfH

Synonym: BSU02210

Alternate gene names: 16077290

Gene position: 242837-241917 (Counterclockwise)

Preceding gene: 16077291

Following gene: 16077289

Centisome position: 5.76

GC content: 44.52

Gene sequence:

>921_bases
ATGAACATACAAAGAGAAACTTCGGGGCATATCGCAGCCATTGTGACCATTCTGATTTGGGGGACGACCTTTATTTCGAC
AAAAGTTCTGCTGGCTGACTTCTCTCCAATGGAAATATTATTTTATCGGTTTTTGATGGGCTTTATCGCTCTTATCCTCG
TCCGTCCCAACATGATTCCGTTCAGAAATTGGCGGCAGGAGCTGTTGTTTGCCGGAGCTGGTTTATTTGGCGTAACCTTA
TACTTTCTATTAGAAAATATAGCTCTCACCTATACATACGCCTCCAATGTCGGCATGATCGTGTCCATTATACCGATGAT
CACTGCGGTTTTGGCCCATTTTCTGCTCGAAGGCGAAAAATTGCGTCTGACTTTTTTGATTGGATTTATCTCGGCACTGA
TCGGGCTTTTATTGATTACGTTTAACGGCAATGTGGTACTGCGTCTAAATCCGCTCGGAGACATCATGGCAGCCGGGGCT
GCTCTCGTGTTTGGCGGATACTCGATATTCATGAAAAAATTAAGCGCCTACGAATACCACATCATCGAGCTGACACAGAG
AGTATTTTTGTATGGTTTATTGTTTATGGTTCCCGCTTTATTTTTGTTCGACTTCCATTTTGACCTAAGCCGATTTTCAT
CTGCTTCAAATATACTCAACATGCTTTTCTTAGGGATTGGCGCTTCTGCCCTGTGCTTCGCCACTTGGAATTATTCAGTT
GGAGTGCTCGGAGCCGTCAAATCCAGTGCGTATATTTACATGGTCCCGGTTATCACGATCGCCGCTTCTGTCCTGATTCT
GCACGAAAACATGACATGGATCGCTCTTCTAGGAGGCGCGCTTACACTTTTAGGCCTCTACATTTCAGAGCTGAAACCGA
AAGCGAAGCTGTTGGAGAACGGATGTAAAATGGATGCTTAA

Upstream 100 bases:

>100_bases
CAGGATTCAGCGATCAGAGTCATATGACGAAGTTTTTTAAACGGCAGGTGGGGCTGACGCCGAAGCAATACATGAAGATT
TTTGAAAAGGAGCTTCACAG

Downstream 100 bases:

>100_bases
CGGCATCCATTTTTTTATTTTGTCCTACGTTTGCCACCTATAAATGAACGCAATCTAACAAAGGAGGAATCGAAATGGTT
GATGAAATGGTCTTAATCAC

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MNIQRETSGHIAAIVTILIWGTTFISTKVLLADFSPMEILFYRFLMGFIALILVRPNMIPFRNWRQELLFAGAGLFGVTL
YFLLENIALTYTYASNVGMIVSIIPMITAVLAHFLLEGEKLRLTFLIGFISALIGLLLITFNGNVVLRLNPLGDIMAAGA
ALVFGGYSIFMKKLSAYEYHIIELTQRVFLYGLLFMVPALFLFDFHFDLSRFSSASNILNMLFLGIGASALCFATWNYSV
GVLGAVKSSAYIYMVPVITIAASVLILHENMTWIALLGGALTLLGLYISELKPKAKLLENGCKMDA

Sequences:

>Translated_306_residues
MNIQRETSGHIAAIVTILIWGTTFISTKVLLADFSPMEILFYRFLMGFIALILVRPNMIPFRNWRQELLFAGAGLFGVTL
YFLLENIALTYTYASNVGMIVSIIPMITAVLAHFLLEGEKLRLTFLIGFISALIGLLLITFNGNVVLRLNPLGDIMAAGA
ALVFGGYSIFMKKLSAYEYHIIELTQRVFLYGLLFMVPALFLFDFHFDLSRFSSASNILNMLFLGIGASALCFATWNYSV
GVLGAVKSSAYIYMVPVITIAASVLILHENMTWIALLGGALTLLGLYISELKPKAKLLENGCKMDA
>Mature_306_residues
MNIQRETSGHIAAIVTILIWGTTFISTKVLLADFSPMEILFYRFLMGFIALILVRPNMIPFRNWRQELLFAGAGLFGVTL
YFLLENIALTYTYASNVGMIVSIIPMITAVLAHFLLEGEKLRLTFLIGFISALIGLLLITFNGNVVLRLNPLGDIMAAGA
ALVFGGYSIFMKKLSAYEYHIIELTQRVFLYGLLFMVPALFLFDFHFDLSRFSSASNILNMLFLGIGASALCFATWNYSV
GVLGAVKSSAYIYMVPVITIAASVLILHENMTWIALLGGALTLLGLYISELKPKAKLLENGCKMDA

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains

Homologues:

Organism=Escherichia coli, GI1789575, Length=278, Percent_Identity=30.5755395683453, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBFH_BACSU (O31448)

Other databases:

- EMBL:   AB006424
- EMBL:   AL009126
- PIR:   C69749
- RefSeq:   NP_388103.1
- ProteinModelPortal:   O31448
- EnsemblBacteria:   EBBACT00000003167
- GeneID:   938440
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU02210
- NMPDR:   fig|224308.1.peg.222
- GenoList:   BSU02210
- GeneTree:   EBGT00070000031858
- HOGENOM:   HBG477024
- OMA:   CGVTLYF
- PhylomeDB:   O31448
- ProtClustDB:   CLSK886612
- BioCyc:   BSUB:BSU02210-MONOMER
- GO:   GO:0006810
- InterPro:   IPR000620

Pfam domain/function: PF00892 DUF6

EC number: NA

Molecular weight: Translated: 33843; Mature: 33843

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb05a0f8)-; HASH(0xc193170)-; HASH(0xc8e03d0)-; HASH(0xbbde958)-; HASH(0xc8c19c0)-; HASH(0xc53a02c)-; HASH(0xc39fb24)-; HASH(0xbceaa84)-; HASH(0xc8afbc8)-; HASH(0xb03b5e4)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQRETSGHIAAIVTILIWGTTFISTKVLLADFSPMEILFYRFLMGFIALILVRPNMIP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
FRNWRQELLFAGAGLFGVTLYFLLENIALTYTYASNVGMIVSIIPMITAVLAHFLLEGEK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
LRLTFLIGFISALIGLLLITFNGNVVLRLNPLGDIMAAGAALVFGGYSIFMKKLSAYEYH
CHHHHHHHHHHHHHHHHEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIELTQRVFLYGLLFMVPALFLFDFHFDLSRFSSASNILNMLFLGIGASALCFATWNYSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCE
GVLGAVKSSAYIYMVPVITIAASVLILHENMTWIALLGGALTLLGLYISELKPKAKLLEN
EEHEECCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
GCKMDA
CCCCCH
>Mature Secondary Structure
MNIQRETSGHIAAIVTILIWGTTFISTKVLLADFSPMEILFYRFLMGFIALILVRPNMIP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
FRNWRQELLFAGAGLFGVTLYFLLENIALTYTYASNVGMIVSIIPMITAVLAHFLLEGEK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
LRLTFLIGFISALIGLLLITFNGNVVLRLNPLGDIMAAGAALVFGGYSIFMKKLSAYEYH
CHHHHHHHHHHHHHHHHEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIELTQRVFLYGLLFMVPALFLFDFHFDLSRFSSASNILNMLFLGIGASALCFATWNYSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCE
GVLGAVKSSAYIYMVPVITIAASVLILHENMTWIALLGGALTLLGLYISELKPKAKLLEN
EEHEECCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
GCKMDA
CCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377