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The map label for this gene is ybbB

Identifier: 16077232

GI number: 16077232

Start: 183414

End: 185003

Strand: Reverse

Name: ybbB

Synonym: BSU01640

Alternate gene names: 16077232

Gene position: 185003-183414 (Counterclockwise)

Preceding gene: 16077233

Following gene: 16077231

Centisome position: 4.39

GC content: 42.58

Gene sequence:

>1590_bases
GTGCAAAATGCAGTGATTTATCAACCAGTACAAATTGAATATCTAAAAAAGACAAGTGATCTCTTCTCAGAACAGCAATT
AGCCGATTCATTCGTGCTGATTTTTCATTTAAAAGGAAACGGCTATATTTCGATCGGAACAAACACCAATCCTCTGCAAA
AAAAGACACTTTATGTTTGTCCGCCTAACGAGACCTTTGGCTTTACGCCAGCAGCCGATGGACATATAGATGCCTGTATA
ATCAGGCTTCTAAGCTATATCAAGGAAACCGGGCAAGATATTTTCACACCGTGCACAGAATCGGAATTAGCCAAACTGAA
GCTTATGAATGTTTCACATATCGAAAATCTTGCAGTCCGGCTTCAAGAGCTTGCCGCACTATGGAATGAATCGTCTCAGC
TTTCTCAGCTAAAATGTGTGATTGAAGTACAAAGCCTGATTTATGATCTTTTTACTGCCAGTTTATCTGATCAAACGGAT
ACACATTCAGCAATCGAAAAAACAAAACACTATATCGAAACCCATGCCGATACAAAAATCACGCTTGCCCAGCTGTCGCA
AATGGCAGGAATCAGTGCCAAACACTACAGTGAAAGCTTTAAAAAATGGACAGGACAGAGCGTAACAGAATTTATTACGA
AAACACGAATCACAAAGGCAAAACGGCTCATGGCAAAATCAAACTGCAAATTGAAAGAAATCGCACACCAAACCGGTTAT
CAAGATGAATTTTATTTCAGCAGAATCTTTAAAAAATATACAGGCTGTTCACCTACAAGCTATATGAAAAAACGCCGAAA
GAAAATCGCCGCATACGGAAGGGGCACAATGGGCCATCTCATCCCTCTTCACCACATACCTTTTGCGGCCGCTCTGCATC
CGAAATGGACGTCTTACTACTATCAGCATTATTCGACAGATATACCCGTCCAGCTCAGTGCATACCGGTTTAATGAAAAG
TGGGAAGAAAACCTGTACACGTTATCACAGGCAGAACCAGATGTGATTGTCAGCATGGATTCTATTTCTCCAGAAGAACA
AGATCGCCTGAATCGCATCGCAGAAGTCATGTACCTTCCTTCAGAAGAAAGCTGGAGAACCCACTTTCTGCAAACTGCCT
CATTTTTAAAGGAGGAGTCCGAAGCAGAAAAGTGGCTAGCGGATTATGACCAGCAGACAACGGCCGCCAAAAAAACACTT
CAGCACGTTCAAGGGCTGCGTTTTCTCTTTTTGAGGCTGCATAAGCAAAACTTCTATCTGGCTCATAACCGAAGTGTCCG
CGAAGTTTTCTTTGGGGATTTAGGATTCAGCTCGGCAACAACGGCTGACACACCTTCAGAACAAGCGATTTCGTTAGAAA
ATATCGCAAATTACCAAGCTGACTGTATGATGCTTTTTCTTTTTAAAGAGCCGGAGACCATAGCTTACTACCAGCAATTA
CAGCAGACAGAAGCATGGCAAAACCTAAGCGCGGTACGAGATAACCGTGTTTATCTTCTATCCCTTGACCCGTGGAATGA
ATACTCAGCTTGCGGGCACGAACGCATCGTTCAGCAAACTGTTTCTTTACTATCCGGAGATTGTCCATGA

Upstream 100 bases:

>100_bases
AAAAACCCACCCGCTTTATATAGGAAAACTTTCATTTATTTGGTACAATTTTTATTGAAAATGATTATCAATTGAAAGCT
TCTGAAAAGGTGGTCTACTC

Downstream 100 bases:

>100_bases
TAAATCAGGAATTTGTCCATGGTGTTATATCTGTTCATTCTCTATAATTCCAATTGATAATAGTTATCAATTGAACAGGA
GGCTCTATAGATGAAAAAGA

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MQNAVIYQPVQIEYLKKTSDLFSEQQLADSFVLIFHLKGNGYISIGTNTNPLQKKTLYVCPPNETFGFTPAADGHIDACI
IRLLSYIKETGQDIFTPCTESELAKLKLMNVSHIENLAVRLQELAALWNESSQLSQLKCVIEVQSLIYDLFTASLSDQTD
THSAIEKTKHYIETHADTKITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLMAKSNCKLKEIAHQTGY
QDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGTMGHLIPLHHIPFAAALHPKWTSYYYQHYSTDIPVQLSAYRFNEK
WEENLYTLSQAEPDVIVSMDSISPEEQDRLNRIAEVMYLPSEESWRTHFLQTASFLKEESEAEKWLADYDQQTTAAKKTL
QHVQGLRFLFLRLHKQNFYLAHNRSVREVFFGDLGFSSATTADTPSEQAISLENIANYQADCMMLFLFKEPETIAYYQQL
QQTEAWQNLSAVRDNRVYLLSLDPWNEYSACGHERIVQQTVSLLSGDCP

Sequences:

>Translated_529_residues
MQNAVIYQPVQIEYLKKTSDLFSEQQLADSFVLIFHLKGNGYISIGTNTNPLQKKTLYVCPPNETFGFTPAADGHIDACI
IRLLSYIKETGQDIFTPCTESELAKLKLMNVSHIENLAVRLQELAALWNESSQLSQLKCVIEVQSLIYDLFTASLSDQTD
THSAIEKTKHYIETHADTKITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLMAKSNCKLKEIAHQTGY
QDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGTMGHLIPLHHIPFAAALHPKWTSYYYQHYSTDIPVQLSAYRFNEK
WEENLYTLSQAEPDVIVSMDSISPEEQDRLNRIAEVMYLPSEESWRTHFLQTASFLKEESEAEKWLADYDQQTTAAKKTL
QHVQGLRFLFLRLHKQNFYLAHNRSVREVFFGDLGFSSATTADTPSEQAISLENIANYQADCMMLFLFKEPETIAYYQQL
QQTEAWQNLSAVRDNRVYLLSLDPWNEYSACGHERIVQQTVSLLSGDCP
>Mature_529_residues
MQNAVIYQPVQIEYLKKTSDLFSEQQLADSFVLIFHLKGNGYISIGTNTNPLQKKTLYVCPPNETFGFTPAADGHIDACI
IRLLSYIKETGQDIFTPCTESELAKLKLMNVSHIENLAVRLQELAALWNESSQLSQLKCVIEVQSLIYDLFTASLSDQTD
THSAIEKTKHYIETHADTKITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLMAKSNCKLKEIAHQTGY
QDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGTMGHLIPLHHIPFAAALHPKWTSYYYQHYSTDIPVQLSAYRFNEK
WEENLYTLSQAEPDVIVSMDSISPEEQDRLNRIAEVMYLPSEESWRTHFLQTASFLKEESEAEKWLADYDQQTTAAKKTL
QHVQGLRFLFLRLHKQNFYLAHNRSVREVFFGDLGFSSATTADTPSEQAISLENIANYQADCMMLFLFKEPETIAYYQQL
QQTEAWQNLSAVRDNRVYLLSLDPWNEYSACGHERIVQQTVSLLSGDCP

Specific function: Unknown

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790391, Length=116, Percent_Identity=29.3103448275862, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786251, Length=106, Percent_Identity=30.188679245283, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YBBB_BACSU (P40408)

Other databases:

- EMBL:   L19954
- EMBL:   AB002150
- EMBL:   AL009126
- PIR:   I39841
- RefSeq:   NP_388045.1
- ProteinModelPortal:   P40408
- EnsemblBacteria:   EBBACT00000001268
- GeneID:   938888
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU01640
- NMPDR:   fig|224308.1.peg.164
- GenoList:   BSU01640
- GeneTree:   EBGT00050000000043
- HOGENOM:   HBG338037
- OMA:   PWREYSA
- PhylomeDB:   P40408
- ProtClustDB:   CLSK886587
- BioCyc:   BSUB:BSU01640-MONOMER
- GO:   GO:0005622
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002491
- Gene3D:   G3DSA:1.10.10.60
- PRINTS:   PR00032
- SMART:   SM00342

Pfam domain/function: PF00165 HTH_AraC; PF01497 Peripla_BP_2; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 60764; Mature: 60764

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50983 FE_B12_PBP; PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNAVIYQPVQIEYLKKTSDLFSEQQLADSFVLIFHLKGNGYISIGTNTNPLQKKTLYVC
CCCCEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEECCCCCCCCCCEEEEE
PPNETFGFTPAADGHIDACIIRLLSYIKETGQDIFTPCTESELAKLKLMNVSHIENLAVR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHCCHHHHHHHHHH
LQELAALWNESSQLSQLKCVIEVQSLIYDLFTASLSDQTDTHSAIEKTKHYIETHADTKI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEE
TLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLMAKSNCKLKEIAHQTGY
HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
QDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGTMGHLIPLHHIPFAAALHPKWTSYY
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCCCCHHHHH
YQHYSTDIPVQLSAYRFNEKWEENLYTLSQAEPDVIVSMDSISPEEQDRLNRIAEVMYLP
HHHHCCCCCEEEEEEECCCHHHHHHEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
SEESWRTHFLQTASFLKEESEAEKWLADYDQQTTAAKKTLQHVQGLRFLFLRLHKQNFYL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
AHNRSVREVFFGDLGFSSATTADTPSEQAISLENIANYQADCMMLFLFKEPETIAYYQQL
ECCCCHHHHHHCCCCCCCCCCCCCCCHHHEEHHHHHCCCCCEEEEEEECCCCHHHHHHHH
QQTEAWQNLSAVRDNRVYLLSLDPWNEYSACGHERIVQQTVSLLSGDCP
HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQNAVIYQPVQIEYLKKTSDLFSEQQLADSFVLIFHLKGNGYISIGTNTNPLQKKTLYVC
CCCCEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEECCCCCCCCCCEEEEE
PPNETFGFTPAADGHIDACIIRLLSYIKETGQDIFTPCTESELAKLKLMNVSHIENLAVR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHCCHHHHHHHHHH
LQELAALWNESSQLSQLKCVIEVQSLIYDLFTASLSDQTDTHSAIEKTKHYIETHADTKI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEE
TLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLMAKSNCKLKEIAHQTGY
HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
QDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGTMGHLIPLHHIPFAAALHPKWTSYY
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCCCCHHHHH
YQHYSTDIPVQLSAYRFNEKWEENLYTLSQAEPDVIVSMDSISPEEQDRLNRIAEVMYLP
HHHHCCCCCEEEEEEECCCHHHHHHEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
SEESWRTHFLQTASFLKEESEAEKWLADYDQQTTAAKKTLQHVQGLRFLFLRLHKQNFYL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
AHNRSVREVFFGDLGFSSATTADTPSEQAISLENIANYQADCMMLFLFKEPETIAYYQQL
ECCCCHHHHHHCCCCCCCCCCCCCCCHHHEEHHHHHCCCCCEEEEEEECCCCHHHHHHHH
QQTEAWQNLSAVRDNRVYLLSLDPWNEYSACGHERIVQQTVSLLSGDCP
HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377