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The map label for this gene is ybaN

Identifier: 16077225

GI number: 16077225

Start: 159779

End: 160543

Strand: Reverse

Name: ybaN

Synonym: BSU01570

Alternate gene names: 16077225

Gene position: 160543-159779 (Counterclockwise)

Preceding gene: 255767041

Following gene: 16077223

Centisome position: 3.81

GC content: 41.96

Gene sequence:

>765_bases
GTGAATCACTTCTATGTGTGGCACATTAAACGGGTAAAACAATTAATTATTATACTTATCGCCGCATTTGCAGCTGCCAG
CTTTTTTTATATCCAAAGAGCTGTCCCGCTTCCCGTGTTTTCAACTGACACCGGACCTAAAGCCATTTATAAAGGAGAAA
CAGACTCTAAAGATATTTCACTTACTTTCGATATCAGCTGGGGTGATGAGAGAGCAGAACCGATACTTAATACTCTGAAA
GCAAACGGGATTAAAAACGCAACGTTTTTCCTGTCCGCTTCTTGGGCAGAACGCCATCCCGACACAGTGGCCCGTATCGT
AAAGGACGGCCATCAAATCGGGAGCATGGGCTACGCTTATAAAAACTATGCCAATTTAGAGAGCAGCGAAATAAAAAAGG
ACATGAACCGTGCGCAAACAGCCTTTGAAAAGTTAGGGGTCAAAGACATACAGCTATTAAGACCCCCTACCGGCCAATTC
AATAAGAATGTTCTAAAGGTCGCAAAGCAATACAATTATACAGTCGTTCATTACAGTGTGAACTCTCAAGACTGGACAAA
TCCCGGAGTTGAAAAAATCATCGACAATGTGACCAAGCAAGTTTCCGGTGGAGACATTATTCTTTTACATGCCTCCGATT
CTGCAAAACAAACAGAAGAAGCATTGCCTGATATCATCCATCAGCTGAAAGAAAAAGGATTAAAAAATGTAACCGTGGGT
GATCTCATCGCAAATTCTGATGCCAAATCCGCAGAGGTAAAGTAA

Upstream 100 bases:

>100_bases
TTAGGCTGTATGTGAAGAGACATTTTATCGGTTATATTCAATTGTCCATGCTCATAAGATGTAAAACAAGAATGATGGAC
AAGATAAGGAGGCATCATCA

Downstream 100 bases:

>100_bases
TTACTTTGCTGCAAACTTCGGCAGCATCAGCAATTGGAAGGCATTACATGCCATTAACGGAAAAAGCATTAAATAAAGCC
AGTCCTCATCATTTACTCTT

Product: polysaccharide deacetylase involved in sporulation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNHFYVWHIKRVKQLIIILIAAFAAASFFYIQRAVPLPVFSTDTGPKAIYKGETDSKDISLTFDISWGDERAEPILNTLK
ANGIKNATFFLSASWAERHPDTVARIVKDGHQIGSMGYAYKNYANLESSEIKKDMNRAQTAFEKLGVKDIQLLRPPTGQF
NKNVLKVAKQYNYTVVHYSVNSQDWTNPGVEKIIDNVTKQVSGGDIILLHASDSAKQTEEALPDIIHQLKEKGLKNVTVG
DLIANSDAKSAEVK

Sequences:

>Translated_254_residues
MNHFYVWHIKRVKQLIIILIAAFAAASFFYIQRAVPLPVFSTDTGPKAIYKGETDSKDISLTFDISWGDERAEPILNTLK
ANGIKNATFFLSASWAERHPDTVARIVKDGHQIGSMGYAYKNYANLESSEIKKDMNRAQTAFEKLGVKDIQLLRPPTGQF
NKNVLKVAKQYNYTVVHYSVNSQDWTNPGVEKIIDNVTKQVSGGDIILLHASDSAKQTEEALPDIIHQLKEKGLKNVTVG
DLIANSDAKSAEVK
>Mature_254_residues
MNHFYVWHIKRVKQLIIILIAAFAAASFFYIQRAVPLPVFSTDTGPKAIYKGETDSKDISLTFDISWGDERAEPILNTLK
ANGIKNATFFLSASWAERHPDTVARIVKDGHQIGSMGYAYKNYANLESSEIKKDMNRAQTAFEKLGVKDIQLLRPPTGQF
NKNVLKVAKQYNYTVVHYSVNSQDWTNPGVEKIIDNVTKQVSGGDIILLHASDSAKQTEEALPDIIHQLKEKGLKNVTVG
DLIANSDAKSAEVK

Specific function: Necessary to maintain spores after the late stage of sporulation. Might be involved in cortex formation

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Forespore. Note=Produced in the mother cell compartment and transported into the forespore

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDAB_BACSU (P50865)

Other databases:

- EMBL:   D64126
- EMBL:   AL009126
- EMBL:   U23797
- PIR:   B69743
- RefSeq:   NP_388038.1
- ProteinModelPortal:   P50865
- SMR:   P50865
- EnsemblBacteria:   EBBACT00000003149
- GeneID:   938911
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU01570
- NMPDR:   fig|224308.1.peg.157
- GenoList:   BSU01570
- GeneTree:   EBGT00070000031813
- HOGENOM:   HBG751163
- OMA:   IILMHAS
- PhylomeDB:   P50865
- ProtClustDB:   CLSK872654
- BioCyc:   BSUB:BSU01570-MONOMER
- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014132
- Gene3D:   G3DSA:3.20.20.370
- TIGRFAMs:   TIGR02764

Pfam domain/function: PF01522 Polysacc_deac_1; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 28324; Mature: 28324

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHFYVWHIKRVKQLIIILIAAFAAASFFYIQRAVPLPVFSTDTGPKAIYKGETDSKDIS
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEECCCCCCCEEE
LTFDISWGDERAEPILNTLKANGIKNATFFLSASWAERHPDTVARIVKDGHQIGSMGYAY
EEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHCHHHHHHHHHCCHHHCCCCHHH
KNYANLESSEIKKDMNRAQTAFEKLGVKDIQLLRPPTGQFNKNVLKVAKQYNYTVVHYSV
HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCHHHHHHHHHHHCCEEEEEEEE
NSQDWTNPGVEKIIDNVTKQVSGGDIILLHASDSAKQTEEALPDIIHQLKEKGLKNVTVG
CCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
DLIANSDAKSAEVK
HHHCCCCCCCCCCC
>Mature Secondary Structure
MNHFYVWHIKRVKQLIIILIAAFAAASFFYIQRAVPLPVFSTDTGPKAIYKGETDSKDIS
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEECCCCCCCEEE
LTFDISWGDERAEPILNTLKANGIKNATFFLSASWAERHPDTVARIVKDGHQIGSMGYAY
EEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHCHHHHHHHHHCCHHHCCCCHHH
KNYANLESSEIKKDMNRAQTAFEKLGVKDIQLLRPPTGQFNKNVLKVAKQYNYTVVHYSV
HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCHHHHHHHHHHHCCEEEEEEEE
NSQDWTNPGVEKIIDNVTKQVSGGDIILLHASDSAKQTEEALPDIIHQLKEKGLKNVTVG
CCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
DLIANSDAKSAEVK
HHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969501; 9384377; 8576055