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The map label for this gene is ydiC [H]

Identifier: 159901487

GI number: 159901487

Start: 6314105

End: 6314776

Strand: Direct

Name: ydiC [H]

Synonym: Haur_4976

Alternate gene names: 159901487

Gene position: 6314105-6314776 (Clockwise)

Preceding gene: 159901486

Following gene: 159901488

Centisome position: 99.49

GC content: 55.21

Gene sequence:

>672_bases
ATGTTACTTGCCTTTGATACTGCCACCGACACCGCTGGGGTTGCCGTGTACGATGCCACTGGATTACGTGCTGAAGCCAA
TTGGTTTGCTGGGCGCGGCCATTCCAGCCAATTATTGCCAATGGCCCAGCAATTACTCAGCAACCTTGATCTGACCCCAG
CTGAATTAACTGGGGTTGCCGTTTCGGTTGGGCCTGGCTCGTGGAGCGGCATTCGGGTTGGCATGAGCAGTGCCAAAGGC
CTAGCCTTGGCCCACGATTTGCCGTTGCTTGGTATTAGCAGCCTTGAAACCTTGGCCTATCCCCATCAGCGGATTGGGCG
CAGCGTGATTGCCGTGATCAAACTTGGGCGCGATCGGTATGCCATGGCTGAATATCGCTTACGCCGAGCTTGGACGCGAA
TCGGAGTTGAACGCAATGTTTCGCGCGAAGAATTGTTGGCGGCAATTCCTGAATTGGCGTTAGTTTGCGGCGATGTTGAC
CCTCGTTTAGCGTTGTCAATTAACGAAGCACGAGGGGCTGGGGTTGTGATTCCATCGCCAGCGGTTGGTTTGCGCCGCGC
TGGTTTCTTAGCCGAGATTGCTTGGAATCGGCTGCAAGCGGGCGAACGCGACGATTTGACTAGCTTAGAGCCTTCATATT
TGGGTGCAGCGGTCAAGGAGCCAGCCAAGTGA

Upstream 100 bases:

>100_bases
ATGCGACTCAAGCCGCATGGCGAGCGCTATAAGCAATTGATCCAGCGCTTACGTGGTAAATAATTGGGCCTTCTGCCTGT
GTTGTTAGATTGAGATTGTT

Downstream 100 bases:

>100_bases
AAGCGATTCGGCGGGTTTTGATCTTTGGCTCTATGGGGTCGGGCAAAAGCACACTGACCAAGCGACTTGGGGCAGTTTTG
AAGTTGCCAGTCATCCATCT

Product: peptidase M22 glycoprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MLLAFDTATDTAGVAVYDATGLRAEANWFAGRGHSSQLLPMAQQLLSNLDLTPAELTGVAVSVGPGSWSGIRVGMSSAKG
LALAHDLPLLGISSLETLAYPHQRIGRSVIAVIKLGRDRYAMAEYRLRRAWTRIGVERNVSREELLAAIPELALVCGDVD
PRLALSINEARGAGVVIPSPAVGLRRAGFLAEIAWNRLQAGERDDLTSLEPSYLGAAVKEPAK

Sequences:

>Translated_223_residues
MLLAFDTATDTAGVAVYDATGLRAEANWFAGRGHSSQLLPMAQQLLSNLDLTPAELTGVAVSVGPGSWSGIRVGMSSAKG
LALAHDLPLLGISSLETLAYPHQRIGRSVIAVIKLGRDRYAMAEYRLRRAWTRIGVERNVSREELLAAIPELALVCGDVD
PRLALSINEARGAGVVIPSPAVGLRRAGFLAEIAWNRLQAGERDDLTSLEPSYLGAAVKEPAK
>Mature_223_residues
MLLAFDTATDTAGVAVYDATGLRAEANWFAGRGHSSQLLPMAQQLLSNLDLTPAELTGVAVSVGPGSWSGIRVGMSSAKG
LALAHDLPLLGISSLETLAYPHQRIGRSVIAVIKLGRDRYAMAEYRLRRAWTRIGVERNVSREELLAAIPELALVCGDVD
PRLALSINEARGAGVVIPSPAVGLRRAGFLAEIAWNRLQAGERDDLTSLEPSYLGAAVKEPAK

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=127, Percent_Identity=33.8582677165354, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 23722; Mature: 23722

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLAFDTATDTAGVAVYDATGLRAEANWFAGRGHSSQLLPMAQQLLSNLDLTPAELTGVA
CEEEEECCCCCCCEEEEECCCCEECCCEEECCCCCCHHHHHHHHHHHHCCCCCHHHCEEE
VSVGPGSWSGIRVGMSSAKGLALAHDLPLLGISSLETLAYPHQRIGRSVIAVIKLGRDRY
EEECCCCCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHH
AMAEYRLRRAWTRIGVERNVSREELLAAIPELALVCGDVDPRLALSINEARGAGVVIPSP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCC
AVGLRRAGFLAEIAWNRLQAGERDDLTSLEPSYLGAAVKEPAK
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MLLAFDTATDTAGVAVYDATGLRAEANWFAGRGHSSQLLPMAQQLLSNLDLTPAELTGVA
CEEEEECCCCCCCEEEEECCCCEECCCEEECCCCCCHHHHHHHHHHHHCCCCCHHHCEEE
VSVGPGSWSGIRVGMSSAKGLALAHDLPLLGISSLETLAYPHQRIGRSVIAVIKLGRDRY
EEECCCCCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHH
AMAEYRLRRAWTRIGVERNVSREELLAAIPELALVCGDVDPRLALSINEARGAGVVIPSP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCC
AVGLRRAGFLAEIAWNRLQAGERDDLTSLEPSYLGAAVKEPAK
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]