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The map label for this gene is ygiF [C]

Identifier: 159901188

GI number: 159901188

Start: 5973265

End: 5974830

Strand: Reverse

Name: ygiF [C]

Synonym: Haur_4676

Alternate gene names: 159901188

Gene position: 5974830-5973265 (Counterclockwise)

Preceding gene: 159901191

Following gene: 159901184

Centisome position: 94.14

GC content: 53.13

Gene sequence:

>1566_bases
ATGGAACAAGAAGCCAAATACCGCGCAACGCAACCGATTCGCCCCAAACAACTTGAAGCCATTAATATCGCGCCGTTTAG
CCTTGGCGAGCGGGTAACCGTCGAAATTCGCGATAGCATTTTGGATACCGCCAGCCGCCAACTCGATCAGCAGCGCTACA
CTCTACGTATCCGCCGGATTGACCAACAATTATGGCTAACCTTGAAACTGCCGGGCAAAGTTAAAGGTGCTGTCCATCAA
CGCCAAGAATTTGAGCATGAAATTACGCCGAATGTGCGCGATCATCCTGAATTGTGGCCCAGCGATATTCGCGAGCCACT
GCAGGCAGTAATTGGCGACGAGCCATTATTGCCAATGCTGACCGTGCGCAATCGACGACGGCTCTGGCGGATCGAGCGCG
ATGGCCAAGAGATCGCCGAATTGGCACTTGATCGTGGCTCTTTGGTCAGTGGCGAACGTTCGTTGCCGTTCCACGAGATT
GAAATCGAACTCAAAGGCGTAGGCACTGCTGCTGATCTCGCAGTGTTGGCCTCGATTTACACCACGCAACTGCCGCTGGA
GCCAGAAACCCGCTCCAAGAGCCAGCGCGGAATGCTGCTTTTGAACCATGCCGAGCATCTCGAACAACTCAAACAAGCGG
TTGATCGCACACCGATGGAGTCAACTAACAATTTGGCCGAAGCAGGGCGCTCAATTTTGGCCAAACATGTGCTGAAATTA
CACAAAGCTTGGCCAATCGCGGTAGTTGGCGATGATTCCGAGGGTGTGCATCAGATGCGCGTGGCAACCCGCCGCTTGCG
CACAATTTTGGCGATTTTGGGTGAAACCCTCTACGAACCAGAAATTGTCGCCAAATTGCGGCGAGGTTTGCGCCAATGGG
CCAGCGTTTTGGGCGCGGTGCGCGATGCCGATGTGTTTTTGGGTAAACTTGATGATCATCGCGCCGACTTGCCTGAGCAA
GAACAAGCAGGCTATGCACCCTTGATCGAGTCGATCAGCCAGCAGCGAGATGCGGCACGGGTTGAATTATTGAGCTTTTT
GGAAAGCCGCAAAGCCAGTAAATTTGCCCAGCGTTTGACCGACTTTGTACTGACTGCCGGCGCTGGAGTGCGCGAGGCTG
ATACTAGCGAGGGCCGAGTCGAGCGTAGTTTGGTGCGACATTGGGTTGGCAGCACGGTTTGGAGCCACTACGAGCGCATT
CGCGCCTACGATGTGATCTTAAATGATGCACCAGTGGAGAGTTTGCACCGCCTGCGGATTGAAATTAAGCATCTGCGCTA
TACGCTTGAGCTATTTAGCGCGGCCTTGGCCGAAGAACACGAATCGCTGCTTGAGCAATTAGTCACCGCTCAAGATTATC
TGGGCGATTTGCAAGATGCCGAGGTGGCTTTGGCGGTGGTTGAACAAAGTTTAGCCGAAAACCCTGAAAACGGTGCACTC
TTGGCCTATCAAGCTGCCAAGCAGCAAGAGCATGATCAGCTTCAGTTGAATGCACCCAAAATACTGCGCTCGTTGTTTGA
TCTACCCTTCCGACGACGTTTGGCCTCGATTCTTTCAAAGTTGTAG

Upstream 100 bases:

>100_bases
GTATCAATCATCTCACCCTTTGGGGTGATATTTTACTCTATGCTCAAATCAAGCCCCATGCTATACTAACCGATGGATGA
TGTTGTCACGGAGATGATCC

Downstream 100 bases:

>100_bases
GATTCAAGCATCGGGCGTAAGGAGTAAAAAACCTGCCATGGTTTGAGCATGGCAGGTCTGATCAATTGGGTTTAGATGAT
AAATTCGCTACGGCTGCGGC

Product: CHAD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MEQEAKYRATQPIRPKQLEAINIAPFSLGERVTVEIRDSILDTASRQLDQQRYTLRIRRIDQQLWLTLKLPGKVKGAVHQ
RQEFEHEITPNVRDHPELWPSDIREPLQAVIGDEPLLPMLTVRNRRRLWRIERDGQEIAELALDRGSLVSGERSLPFHEI
EIELKGVGTAADLAVLASIYTTQLPLEPETRSKSQRGMLLLNHAEHLEQLKQAVDRTPMESTNNLAEAGRSILAKHVLKL
HKAWPIAVVGDDSEGVHQMRVATRRLRTILAILGETLYEPEIVAKLRRGLRQWASVLGAVRDADVFLGKLDDHRADLPEQ
EQAGYAPLIESISQQRDAARVELLSFLESRKASKFAQRLTDFVLTAGAGVREADTSEGRVERSLVRHWVGSTVWSHYERI
RAYDVILNDAPVESLHRLRIEIKHLRYTLELFSAALAEEHESLLEQLVTAQDYLGDLQDAEVALAVVEQSLAENPENGAL
LAYQAAKQQEHDQLQLNAPKILRSLFDLPFRRRLASILSKL

Sequences:

>Translated_521_residues
MEQEAKYRATQPIRPKQLEAINIAPFSLGERVTVEIRDSILDTASRQLDQQRYTLRIRRIDQQLWLTLKLPGKVKGAVHQ
RQEFEHEITPNVRDHPELWPSDIREPLQAVIGDEPLLPMLTVRNRRRLWRIERDGQEIAELALDRGSLVSGERSLPFHEI
EIELKGVGTAADLAVLASIYTTQLPLEPETRSKSQRGMLLLNHAEHLEQLKQAVDRTPMESTNNLAEAGRSILAKHVLKL
HKAWPIAVVGDDSEGVHQMRVATRRLRTILAILGETLYEPEIVAKLRRGLRQWASVLGAVRDADVFLGKLDDHRADLPEQ
EQAGYAPLIESISQQRDAARVELLSFLESRKASKFAQRLTDFVLTAGAGVREADTSEGRVERSLVRHWVGSTVWSHYERI
RAYDVILNDAPVESLHRLRIEIKHLRYTLELFSAALAEEHESLLEQLVTAQDYLGDLQDAEVALAVVEQSLAENPENGAL
LAYQAAKQQEHDQLQLNAPKILRSLFDLPFRRRLASILSKL
>Mature_521_residues
MEQEAKYRATQPIRPKQLEAINIAPFSLGERVTVEIRDSILDTASRQLDQQRYTLRIRRIDQQLWLTLKLPGKVKGAVHQ
RQEFEHEITPNVRDHPELWPSDIREPLQAVIGDEPLLPMLTVRNRRRLWRIERDGQEIAELALDRGSLVSGERSLPFHEI
EIELKGVGTAADLAVLASIYTTQLPLEPETRSKSQRGMLLLNHAEHLEQLKQAVDRTPMESTNNLAEAGRSILAKHVLKL
HKAWPIAVVGDDSEGVHQMRVATRRLRTILAILGETLYEPEIVAKLRRGLRQWASVLGAVRDADVFLGKLDDHRADLPEQ
EQAGYAPLIESISQQRDAARVELLSFLESRKASKFAQRLTDFVLTAGAGVREADTSEGRVERSLVRHWVGSTVWSHYERI
RAYDVILNDAPVESLHRLRIEIKHLRYTLELFSAALAEEHESLLEQLVTAQDYLGDLQDAEVALAVVEQSLAENPENGAL
LAYQAAKQQEHDQLQLNAPKILRSLFDLPFRRRLASILSKL

Specific function: Unknown

COG id: COG5607

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygiF [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008172
- InterPro:   IPR004206 [H]

Pfam domain/function: PF01928 CYTH [H]

EC number: NA

Molecular weight: Translated: 59163; Mature: 59163

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQEAKYRATQPIRPKQLEAINIAPFSLGERVTVEIRDSILDTASRQLDQQRYTLRIRRI
CCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
DQQLWLTLKLPGKVKGAVHQRQEFEHEITPNVRDHPELWPSDIREPLQAVIGDEPLLPML
CHHHEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHH
TVRNRRRLWRIERDGQEIAELALDRGSLVSGERSLPFHEIEIELKGVGTAADLAVLASIY
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
TTQLPLEPETRSKSQRGMLLLNHAEHLEQLKQAVDRTPMESTNNLAEAGRSILAKHVLKL
HHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
HKAWPIAVVGDDSEGVHQMRVATRRLRTILAILGETLYEPEIVAKLRRGLRQWASVLGAV
HCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RDADVFLGKLDDHRADLPEQEQAGYAPLIESISQQRDAARVELLSFLESRKASKFAQRLT
HHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFVLTAGAGVREADTSEGRVERSLVRHWVGSTVWSHYERIRAYDVILNDAPVESLHRLRI
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
EIKHLRYTLELFSAALAEEHESLLEQLVTAQDYLGDLQDAEVALAVVEQSLAENPENGAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCE
LAYQAAKQQEHDQLQLNAPKILRSLFDLPFRRRLASILSKL
EEEHHHHHCCCCCEECCHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MEQEAKYRATQPIRPKQLEAINIAPFSLGERVTVEIRDSILDTASRQLDQQRYTLRIRRI
CCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
DQQLWLTLKLPGKVKGAVHQRQEFEHEITPNVRDHPELWPSDIREPLQAVIGDEPLLPML
CHHHEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHH
TVRNRRRLWRIERDGQEIAELALDRGSLVSGERSLPFHEIEIELKGVGTAADLAVLASIY
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
TTQLPLEPETRSKSQRGMLLLNHAEHLEQLKQAVDRTPMESTNNLAEAGRSILAKHVLKL
HHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
HKAWPIAVVGDDSEGVHQMRVATRRLRTILAILGETLYEPEIVAKLRRGLRQWASVLGAV
HCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RDADVFLGKLDDHRADLPEQEQAGYAPLIESISQQRDAARVELLSFLESRKASKFAQRLT
HHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFVLTAGAGVREADTSEGRVERSLVRHWVGSTVWSHYERIRAYDVILNDAPVESLHRLRI
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
EIKHLRYTLELFSAALAEEHESLLEQLVTAQDYLGDLQDAEVALAVVEQSLAENPENGAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCE
LAYQAAKQQEHDQLQLNAPKILRSLFDLPFRRRLASILSKL
EEEHHHHHCCCCCEECCHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]