| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159901165
Identifier: 159901165
GI number: 159901165
Start: 5945780
End: 5946190
Strand: Direct
Name: 159901165
Synonym: Haur_4653
Alternate gene names: NA
Gene position: 5945780-5946190 (Clockwise)
Preceding gene: 159901164
Following gene: 159901166
Centisome position: 93.68
GC content: 42.82
Gene sequence:
>411_bases ATGAGTCTGATTATTCGTTGGCTGATTAATGCGATTGCAATTGCTGTGACGGTTTATTTAGTGCCTGGGATCAGTGGTGG GGTTAGCTCAATTGATCAGCCACTGAGCATTGATCTTAAAACCTTATTGGCTGTTAGTTTGATTTTTGGCTTGATCAACG CCTTGGTTCGGCCAATTCTGAAACTTTTGTCATGTCCACTCGTATTTTTGACGCTCGGTTTGTTTATCTTTGTAATCAAT GCGGCGATGCTGATGCTCACATCGGCAATCTCGCAAGATTTAGGTCTACAATTTTATGTAGAAGATTTTGGCACAGCATT GCTTGGGTCGATTGTTATTTCGTTGATTAGTATTGTATTGACCGCTGTTGTCAGCGATGGTGACGATCAACGCGAACGCC GTCGTCGTTAG
Upstream 100 bases:
>100_bases TGATTAGTAATCCATTAGCAAACCCTTGATATGGCTGATGCCGCATGCGATAATTGGCTGAGCTGTATAGTAATTGGTTT GGCATAGGAAGGTTCATGGT
Downstream 100 bases:
>100_bases AGAAGATGTAGTTGAAGTAAGTAGTCCTTGATTGTGTTGAAAGGAACGCCCTTATGAGTAATCCATACCAACCACAAGAC CCTAACAATCCTTACGGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MSLIIRWLINAIAIAVTVYLVPGISGGVSSIDQPLSIDLKTLLAVSLIFGLINALVRPILKLLSCPLVFLTLGLFIFVIN AAMLMLTSAISQDLGLQFYVEDFGTALLGSIVISLISIVLTAVVSDGDDQRERRRR
Sequences:
>Translated_136_residues MSLIIRWLINAIAIAVTVYLVPGISGGVSSIDQPLSIDLKTLLAVSLIFGLINALVRPILKLLSCPLVFLTLGLFIFVIN AAMLMLTSAISQDLGLQFYVEDFGTALLGSIVISLISIVLTAVVSDGDDQRERRRR >Mature_135_residues SLIIRWLINAIAIAVTVYLVPGISGGVSSIDQPLSIDLKTLLAVSLIFGLINALVRPILKLLSCPLVFLTLGLFIFVINA AMLMLTSAISQDLGLQFYVEDFGTALLGSIVISLISIVLTAVVSDGDDQRERRRR
Specific function: Unknown
COG id: COG1950
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007165 [H]
Pfam domain/function: PF04020 DUF360 [H]
EC number: NA
Molecular weight: Translated: 14685; Mature: 14554
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIIRWLINAIAIAVTVYLVPGISGGVSSIDQPLSIDLKTLLAVSLIFGLINALVRPIL CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KLLSCPLVFLTLGLFIFVINAAMLMLTSAISQDLGLQFYVEDFGTALLGSIVISLISIVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH TAVVSDGDDQRERRRR HHHHCCCCHHHHHCCC >Mature Secondary Structure SLIIRWLINAIAIAVTVYLVPGISGGVSSIDQPLSIDLKTLLAVSLIFGLINALVRPIL HHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KLLSCPLVFLTLGLFIFVINAAMLMLTSAISQDLGLQFYVEDFGTALLGSIVISLISIVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH TAVVSDGDDQRERRRR HHHHCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8550407; 12000953 [H]